Rfun022068.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000014.1:8535112-8537446[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.003 0.35 13.1 0.3 1 23 182 204 182 204 0.98 2 12 5.1e-05 0.0061 18.7 1.8 1 23 210 232 210 232 0.97 3 12 6.3e-05 0.0076 18.4 1.0 3 23 254 275 253 275 0.95 4 12 2.2e-05 0.0026 19.8 0.9 3 23 291 311 290 311 0.99 5 12 1e-05 0.0012 20.9 0.7 2 23 318 339 317 339 0.96 6 12 2.4e-08 2.9e-06 29.1 1.6 1 23 345 367 345 367 0.99 7 12 1.2e-06 0.00015 23.8 0.6 1 23 373 395 373 395 0.97 8 12 0.0044 0.53 12.6 7.4 1 23 401 423 401 423 0.96 9 12 0.0002 0.024 16.8 1.0 1 23 429 451 429 451 0.97 10 12 1.6e-05 0.002 20.2 1.1 1 23 457 479 457 479 0.98 11 12 2.5e-05 0.003 19.7 0.9 1 23 485 507 485 507 0.98 12 12 7e-05 0.0084 18.2 3.5 1 23 513 536 513 536 0.96
Sequence Information
- Coding Sequence
- atGAAACTTGATAGGATCTGCCGAACGTGCTTATTAGAAAAAGCTAACCTAAAGCCCCTATTTGAAGCCTGCGTAGCGAATATGCTCATGTCCTGTGCGGCAATACAAGTGATGCAAGGGGATGGTTTGCCCCATCAGATTTGTACCCAATGCCTACAGAGCGTTAATAGGGCGTATACGTTTAAGCAATTATGCGAAAAATCAGATATCACGTTAAGAAACTATATAAGTTTAAATTTGCAAACGATTTCAATACAAACAGATAACATAATAAACGAAGTAAAGACCGATTTATTCAACACCAGCGAAGTCTTACAACAAACCGCTATTTTCCAGGATATTTTTAATGACGCTACTACTCACTCCTTAGTTGAAACTTTTACCAATCAGAACGCAAGTACTGttGTTTCTGACTTGGCAGAAACAATGCAAAGTTTACAGACGATTGCGGAACAATGCTTGCCCGAATCTTGGGAGAGCGATACTCAGATAGTACCGTGTAACTCTCAGGAAGCTACTGATAGCTTTAATTTAGATCCTTTGTATAAGTGTCAGTTCTGTGGAGATATGTTCAAAGatGAATGGTCACTGGGGGAACACATAAAAAACCATAcaggacaaaataaatattattgtaacaTGTGCGACAAAATCTGTAATAGTTCCAACgagttaaataaacatattttggaACATACTTTTGTAGATACTcctaaaagtaattttgtttcaaCAAGAGACaaagattttagaaatatgtgCAATGTATGTGACAGGACCTTTAACgatatgaaatatttgaaaaaacatttaaaagagaTACATTTTATCGATCCTGATCCTATATTGGACATTGAAAAGAAACATGGATGTACCATATGTGGTAGAAGgtACAGGCagaacaaacttttactaatgCATCTGAGAACTCACACGGGGGAGAGGCCCTTGAGTTGTGAAATATGTGGCAGAACATTCGCCTTACCAAGTTCGTTGCACAAACACAGAAATGTACACAGTACCGAgaagaaatatgtatgtacaacgTGTGGGAAGAGATTTCGTCAATCGTCTAACTTAAACAATCACTTACTTACACATACAGgagaGAGAAATCATATTTGCGGGATATGCGGAAAAACTTTTATGACGAATACTAACCTAGACATACACATGAGAATACACACAGGATTAAAACCCCATAGATGCGTCTATTGCGAAAAAACTTTCACtacTAGTACTCAAATGAAAAAACACTGCAGAATCCATACTGGCGAAAAGCCTTACCCTTGTTGGCAGTGTGGACGCTCCTTCAGCAGAAAAGAAACAAGGGATACCCATGTAAGGTATCACACGGGGGAACGGCCATACGCTTGCGGTATTTGCTCTAAGAAATATATCGCTGCGAGCCATTTGAGgcAACATATGAAAACGCACAATGACGACAGGAAATTCGAATGCGTCATTTGTTCGAAGAAGTTCTTCGATGCTAGGACCTTAAAGAGCCACATAATGACACACACAGGGCGAAAACCCTTCTCTTGTCAATTTTGCGGTAAACAATTCACTCAGAATGGCGGTCTAAATACGCATTTGAAGAATTGTCACAATTAG
- Protein Sequence
- MKLDRICRTCLLEKANLKPLFEACVANMLMSCAAIQVMQGDGLPHQICTQCLQSVNRAYTFKQLCEKSDITLRNYISLNLQTISIQTDNIINEVKTDLFNTSEVLQQTAIFQDIFNDATTHSLVETFTNQNASTVVSDLAETMQSLQTIAEQCLPESWESDTQIVPCNSQEATDSFNLDPLYKCQFCGDMFKDEWSLGEHIKNHTGQNKYYCNMCDKICNSSNELNKHILEHTFVDTPKSNFVSTRDKDFRNMCNVCDRTFNDMKYLKKHLKEIHFIDPDPILDIEKKHGCTICGRRYRQNKLLLMHLRTHTGERPLSCEICGRTFALPSSLHKHRNVHSTEKKYVCTTCGKRFRQSSNLNNHLLTHTGERNHICGICGKTFMTNTNLDIHMRIHTGLKPHRCVYCEKTFTTSTQMKKHCRIHTGEKPYPCWQCGRSFSRKETRDTHVRYHTGERPYACGICSKKYIAASHLRQHMKTHNDDRKFECVICSKKFFDARTLKSHIMTHTGRKPFSCQFCGKQFTQNGGLNTHLKNCHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -