Rfun048462.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rosalia funebris
Gene Symbol
SCRT1
Assembly
GCA_037954035.1
Location
JAZFAV010000029.1:1622721-1629517[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00032 0.038 16.2 0.2 1 23 319 341 319 341 0.95
2 12 1.6e-05 0.0019 20.2 1.5 1 23 349 371 349 371 0.99
3 12 0.00014 0.017 17.3 0.3 2 23 379 400 378 400 0.97
4 12 2.5e-06 0.0003 22.8 0.8 1 23 406 428 406 428 0.99
5 12 0.00021 0.025 16.8 1.8 1 23 435 457 435 457 0.99
6 12 9.9e-05 0.012 17.8 1.4 1 23 463 485 463 485 0.96
7 12 2.5e-05 0.0029 19.7 0.1 1 23 491 513 491 513 0.98
8 12 1.5e-06 0.00018 23.5 1.2 1 23 519 542 519 542 0.96
9 12 2.3e-05 0.0028 19.7 0.5 1 23 548 571 548 571 0.95
10 12 3.6e-05 0.0043 19.1 2.1 1 23 577 599 577 599 0.99
11 12 0.00022 0.027 16.6 0.4 1 23 605 627 605 627 0.94
12 12 0.006 0.71 12.2 0.1 1 21 633 653 633 657 0.92

Sequence Information

Coding Sequence
ATGTCCACGAGTGGTACGGCGTGTATAGCATGCAATGCAAGTTGTCTGTCGAGTAGGAACACTGTGGTCATCTTCAATAAGGAGGGAGATAGTGGAGAAGAGCATATCGCTTCTCTGCTTTCTAAAGTATTGAACAAAGCCATAAAGGAGGATCCTGATCGGTCACAAGTAGTGTGTAAAAAATGCTATAAATTGCTCGAGGAATTGAACGATTTGCAGTATAGagtaactgaaataaaaaatgaaattcttGAGAACCACAAGAATGCTATCCACAAAACTGAATTCGAGGATGAAGTCGAGGTGGAAGACACCAAAGAAATCAATGAGAGTACAATCATAGAAGAATCTAACAAAGAGAATGAGGTGCCCAAGAAAATCCTTGATATACCATCGTCGGATGACGATTCTGCTCAGGTTGATAAGAATTCTCTGCAAACCATTGAAGACATAGAATTAGAGTTGGTCAAAATGCATGAGGGTGTTGATGATGATATTGACCAACAAGAAGAAAAAGAGGCCATGGAAGTTGATGATGAAAATCATCTGGAAGGGGACATCATAGATTCGGGTGCCATAGATCATTCCTCAGATTCCGATTATGAACCACCGTCTGCGGCATCTAACGATTTACTTGTTCGAGCTGCAGTTGCAACAGAAAAGAATATTGTTGAAAATGTGAAGGTGAAACTGGAACCCGGCAGCGACGAATCTCCGATCACCGGTCCCATCGGCATGGAAAAACCGAACATACTCAAAAAGAAGACCCAGGTGATGAGCAACGCTATAACCCAACCCCAAGAGGACAAGAAGTTCCAGGAATTCTTCACTCTCCCGATCGTCTCGAGGGATGGCAACCTGTACACTTGCCTGCTATGCCAAGGCGATGAGACAGTCGCCGGCGAGGCCAAGGCCATCACGATACACATGAAACAGACACACGGCGCACGCATATACATCTGCGACGTCTGCGGACAGGACTTTCGCAAGCGCAATCAACTGTCAGCGCATTTGGATGAGCACGTGGCCGCCGAGGACGGCGACTTCCAGTGTGAAATCTGCAATCGGATATTCAGCAATCTTCGATTATTCCGCATCCATAGACGAATGCACTATCCGCAGAATAAGGCATGGGAATGCGAGACCTGCGGCAAGAAATACAGCAGCAAAAACTTGCTGGACGAGCACGTGAACACCCATCTGGGCGTCCGTCCGTACGTCTGCAACATATGCGGCAAGGACTTCGCCAGCAAGTACACCTACAAGGCCCACGAGAAAACGCACGAGGTCCGGCCGAGGCCTTTCCGTTGCATGCAGTGCCCCAAATCCTTCCTTAGCCAGCAGAACCTCACGCAGCACGAGCGCACTCATTCCGGCATGAAAGAGTTCAGTTGCCATCTGTGTGGCAAGCAGTTCGGCTCGGCGCACAACCTCGAGGTGCACTCCATCGTCCACACCGGTTACAAACCGTTCGTGTGTGGCCTGTGCGGCAAGGCGTTCGCTAGGAAGGCCGAAATCAGGGACCACGAGAGGACGCACACCGGCGAGCGGCCGTATCAGTGCGAGTTCTGCGGCGCCACCTTCAGTCAACGCTCCAACCTCCAGTCGCATAAGCGCGCCACGCACTATGACGATAAGCGGTATCAGTGCACCGATTGCGGGAAGGGTTTCAAGCGCAGGCGGCTACTGGACTACCACGTGAAGGCGGCGCACACCGGCGAGCGGCCATTTAAGTGCGACGTCTGTGAGGCCACCTTCGTCTATCCTGAGCACTTCAAAAAGCACAGGAGGATACATACGGGCGAGAAGCCGTTCTTGTGCGAGGTGTGCGGGAAGGCGTTCAACAGCAGGGACAATCGAAATGCACATCGCTTCGTGCACTCTGACAAAAAGCCGTACGAGTGCCTGGTGTGTGGGGCCGGCTTCATGCGGAAGCCTCTCCTCTACCAGCACATGCAGGCGCAGGGCCACCTCAACGACACCATCGTGGTGAACCAGCCTCGGCTGACCACGGACGACGATCAGCTAGTGACCGTGAACTCCGCCGGCGAGATGGAGATCGTGGACGCCGCCACTGCGGCCGCTGCCGACTCCAAGCTGTACATCCAGGACCAAGACGGCACGGAGCACATCATCATCGATGGGCAGCAGATTAGCTTCGCAGAGGCGGGCAGCGACGAGGAGAACGAGGGAGAGATCATAGACGAGATTGAGCAGGTGGTGACGGGCCAAGTGGACGAGGACTACGAAGAGATCATAAGTAGCGACGCTTTAGCGCACGGCGAGACGCAGATCATCGATACACCTGAGGGGCCGGTGCAACTGGTGAAGGTGCGAATCCCGAACGAAAACGGGGAGGAGGAGGAGGCGTGGATCAAAATCGTTCCCGAGTAG
Protein Sequence
MSTSGTACIACNASCLSSRNTVVIFNKEGDSGEEHIASLLSKVLNKAIKEDPDRSQVVCKKCYKLLEELNDLQYRVTEIKNEILENHKNAIHKTEFEDEVEVEDTKEINESTIIEESNKENEVPKKILDIPSSDDDSAQVDKNSLQTIEDIELELVKMHEGVDDDIDQQEEKEAMEVDDENHLEGDIIDSGAIDHSSDSDYEPPSAASNDLLVRAAVATEKNIVENVKVKLEPGSDESPITGPIGMEKPNILKKKTQVMSNAITQPQEDKKFQEFFTLPIVSRDGNLYTCLLCQGDETVAGEAKAITIHMKQTHGARIYICDVCGQDFRKRNQLSAHLDEHVAAEDGDFQCEICNRIFSNLRLFRIHRRMHYPQNKAWECETCGKKYSSKNLLDEHVNTHLGVRPYVCNICGKDFASKYTYKAHEKTHEVRPRPFRCMQCPKSFLSQQNLTQHERTHSGMKEFSCHLCGKQFGSAHNLEVHSIVHTGYKPFVCGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYQCTDCGKGFKRRRLLDYHVKAAHTGERPFKCDVCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYQHMQAQGHLNDTIVVNQPRLTTDDDQLVTVNSAGEMEIVDAATAAAADSKLYIQDQDGTEHIIIDGQQISFAEAGSDEENEGEIIDEIEQVVTGQVDEDYEEIISSDALAHGETQIIDTPEGPVQLVKVRIPNENGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00886705;
90% Identity
-
80% Identity
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