Rfun001557.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rosalia funebris
Gene Symbol
-
Assembly
GCA_037954035.1
Location
JAZFAV010000002.1:6858692-6867293[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.13 15 8.0 1.0 1 21 132 152 132 153 0.91
2 12 1.5e-05 0.0018 20.4 3.5 1 23 161 183 161 183 0.99
3 12 1.4e-07 1.7e-05 26.7 0.4 1 23 189 211 189 211 0.98
4 12 3.4e-06 0.00041 22.4 2.5 1 23 217 239 217 239 0.99
5 12 0.00067 0.08 15.2 2.9 1 23 245 267 245 267 0.98
6 12 0.0019 0.22 13.8 0.2 2 23 278 299 277 299 0.96
7 12 5.7e-06 0.00068 21.7 0.6 1 23 307 329 307 329 0.97
8 12 1.6e-07 1.9e-05 26.6 5.5 1 23 334 356 334 356 0.99
9 12 5e-07 6e-05 25.0 1.9 1 23 362 384 362 384 0.99
10 12 2.9e-06 0.00035 22.6 1.5 1 23 390 412 390 412 0.98
11 12 1.8e-05 0.0021 20.1 0.8 1 23 418 440 418 440 0.98
12 12 0.00046 0.055 15.7 1.4 1 23 446 469 446 469 0.97

Sequence Information

Coding Sequence
atggCTTTGATTGAaggttttcaaataaaagaagaaCCGCAAGATGATGTCGAAGGAACAACTGAATTAAGTAATATAATTCCCAGTGTAAGTGTAAAATTAGAAGATGACACAATACTACAAGACAAACCAGAGTTTATAAACTTGCAAAGTAGCTCGATAAGTAGTTTTAATGGAACATTAAATGACGATGttttttacgaaaatatttCGAGTGGTGATGCATCATCACTATCACATGAAAAAGTTCAATTAAATGACAATTTAAGTGATACGTGTGATGTCGAAAATATATCTGACAGAAAGGATATAGATCACATTCTAGATAAAGACCAATCTAGTTCTGATAATTCGGGATCTGAGAATTCTTTAAGCGATGAAAACGATGGCGAGTTTACATGTAAGGTCTGCAAGCAGACTTTTTTGGATGAATTTGATTTACAATTACATTTCAAGTCGAGAAGAACAGCCGAAAAGAGTTATAAATGTTGTGGTTGTGACAAAATCTTTAGAGATAACACGCAGTTAAATGTGCATTCTAGAAAACATACTGGCGAGCAGCCCTATGCGTGTACTGTGTGTGATAAAAGATTTTCCGTTAATGGGAATCTGAGTAAGCATATGCGAATTCATACAGGAGAGAGACGGTATGAATGTGATACATGTGAGAGAAAATTCACGCAATATGCACATCTCGAGGATCATATGAAAACTCATTCAGGTGATAGACCGTATGTGTGCGATTTTTGCAAAAGTGCCTTTAAGACAAAGGCAAGACTGAGAAAACACAGAAAATCCCACGAAGACGACAGAATTACCAGGAGATCTGTGTCATGCCCAGTGTGCTTTAAAATGCTGAAAAGTACGAAACAACTCGTATCGCATATGGAAGTCCACGACGCAGACGGTAGTAAACCGTTCCCCTGTAACATTTGTGGAAAAAGTTACAGCAACTTATTTTCTCTGAATTATCACTTAAAAGCACACGGGGAGAAGGGGTTCAAATGCAACCTGTGCGACAAGGCGTTCTGTAACGCCAGCCACTTAAGAAGGCACATGAATTCTCATACAGGTGTAAGGCCATATAGCTGCAAGTTGTGTAAGAGAGGGTTCCCGTCTCAACAGAACTTAAAACGACATATGATGACTCATACCGGTGAGAGGCCGCACAGTTGTCCAGACTGTGGAAAAGGTTTTTTAACGCTAGAAAATCTTACCCGCCACAGGAGAACCCATACCGGGGAGAAACCTTTTCCATGCGACATTTGTGGCCGATTCTTTGCACATAGTACTACAGCCAAGGAACACATGAGAATTCACACCGGAGACAAGCCGTTCCGATGCAGCCTCTGTGATAAGCGGTTTGCGCTGAATAAAGTGCTGTACAAGCATATTCGCGAGCGTCATCCGGCTTACTTTCCAGAATTCAAAAGGATGAACGATCTGCCGCCCAACGTCAAGAGAGCAAGGGAGAAGATGAAACAGGAAGCAATGACCGTCAAAGAAGAAAACGACGTGAAGAACGTGAATACCTCATTGGGCTTGATAAATCGACATGAACACAGCACGAGCGGTGGCAACGTAGTTACAAAGAACGAAAACGCCTGCGACGATATTGAGGAGGTCGTCAATGACATTCCTTTCGTCAAAGTCGAAAAACAGGAGTTCGATTATGCATAA
Protein Sequence
MALIEGFQIKEEPQDDVEGTTELSNIIPSVSVKLEDDTILQDKPEFINLQSSSISSFNGTLNDDVFYENISSGDASSLSHEKVQLNDNLSDTCDVENISDRKDIDHILDKDQSSSDNSGSENSLSDENDGEFTCKVCKQTFLDEFDLQLHFKSRRTAEKSYKCCGCDKIFRDNTQLNVHSRKHTGEQPYACTVCDKRFSVNGNLSKHMRIHTGERRYECDTCERKFTQYAHLEDHMKTHSGDRPYVCDFCKSAFKTKARLRKHRKSHEDDRITRRSVSCPVCFKMLKSTKQLVSHMEVHDADGSKPFPCNICGKSYSNLFSLNYHLKAHGEKGFKCNLCDKAFCNASHLRRHMNSHTGVRPYSCKLCKRGFPSQQNLKRHMMTHTGERPHSCPDCGKGFLTLENLTRHRRTHTGEKPFPCDICGRFFAHSTTAKEHMRIHTGDKPFRCSLCDKRFALNKVLYKHIRERHPAYFPEFKRMNDLPPNVKRAREKMKQEAMTVKEENDVKNVNTSLGLINRHEHSTSGGNVVTKNENACDDIEEVVNDIPFVKVEKQEFDYA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-