Rfun015451.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000009.1:22369833-22378895[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00044 0.053 15.7 1.2 2 23 140 162 139 162 0.96 2 21 0.0068 0.82 12.0 0.3 1 23 186 208 186 208 0.98 3 21 0.013 1.6 11.1 0.3 1 23 212 234 212 234 0.97 4 21 0.0066 0.79 12.0 0.2 1 23 240 263 240 263 0.95 5 21 0.00077 0.092 15.0 2.8 1 23 269 291 269 291 0.97 6 21 0.021 2.5 10.5 0.3 1 23 297 320 297 320 0.92 7 21 6.7e-05 0.0081 18.3 0.9 2 23 332 354 331 354 0.95 8 21 0.00011 0.013 17.6 2.0 3 23 368 388 366 388 0.96 9 21 9e-05 0.011 17.9 0.8 1 23 394 416 394 416 0.98 10 21 1.2e-05 0.0015 20.6 0.0 1 23 422 444 422 444 0.99 11 21 5.1 6.1e+02 2.9 2.1 2 23 533 554 532 555 0.89 12 21 0.071 8.5 8.8 0.2 1 23 574 597 574 597 0.97 13 21 0.0053 0.63 12.3 2.0 1 23 601 623 601 623 0.98 14 21 0.00031 0.037 16.2 2.1 1 23 629 652 629 652 0.98 15 21 0.0066 0.79 12.0 0.4 1 23 658 680 658 680 0.88 16 21 0.014 1.6 11.0 0.8 1 23 686 709 686 709 0.95 17 21 0.00083 0.1 14.9 0.7 2 23 721 743 720 743 0.96 18 21 4.3e-05 0.0051 18.9 1.0 3 23 757 777 755 777 0.96 19 21 3e-05 0.0036 19.4 2.2 1 23 783 805 783 805 0.98 20 21 6.1e-07 7.4e-05 24.7 0.5 1 23 811 833 811 833 0.98 21 21 0.034 4.1 9.8 0.1 1 21 839 859 839 860 0.96
Sequence Information
- Coding Sequence
- ATGAAGGAACCGAGgtTAACACTTACACCGCTGCATTTACCAAACTGTAATCATGTTAGTACAAAAACGTATAAGTGTGCAGAATTATCAgttcaggacatcaaactatTCCAAATAGCCTTCTACAGTTCTGAGAACAAAGTAGCAGAAGATAATTTCATCATCAAATATATCACGCAAAGCCCTCCAAAACGAAGGAGGCCTAGAAACCCTAACAATAGCTTGGCAAgggaaatatatacgaggtaTGGTCAGTTAATAAGTGACAGCTCAAGCGGAAGACATTTCAATCAAGAGGCAACTAAAAAAACGAGACGAATTGAACAAACGTCACCATCCTCTAAAAAAAAGAAACCCAAAACAAGTAAAACCAGATACGTCCCAAAACAGAAACCAAATCAAAGAGCAAGGAGCTGGATATGCAAAATTTGCTTTGAAGAATTCACTTCGAGAAAGAGTCTGTTTAGTCACAGGAAAACCGTACATGATGACACAGAGGAACTAGTCACAAGCGAAGAAACCGAAAAGTTCATATATGACAAGGAATGTGATTTTTATACCTGTAATAATTGCTCTGCCGAATTCCAAACAAAAGCCGAAGTTGAAAAGCACTATGAAATTCACgaggaaaaatattattgtcaAATATGCGACGAGAGTATTTCTGGAGCGTTCAACTTTTCCTCTCATTTGCAGCAACACAGAGAAGACAAGCATTTCCCTTGTCCGCTGTGCTCGCATGTCACAAGCAGGAAATCGGCCATGCTGATCCACATAGTACGTTTACATTTTGGAAAGTACGATTTTCAATGTCAAACGTGCGGAAAATGTTTCAACGATGCTCTGACATTTAAGGAACACGAAAACCTCCACCTCGGTTTGAAACCCTTCGTCTGCATCGTATGCAACAAGGACTTTGTGTACTCTCGTTACCTAATTGCGCATCAAGTCCGTAATCATAGAGTACGGGTTTTAGATAGGGAGTCAAAAACACAATGCAACATGTGCTCAAAAATTTTCGCCAGAAATGAAACTTTAGCTAAACATATGGTTAAGAAGCACTTATCCTACCAAGAAGGCCCAGCTGAGAAGAAGCATTTGTGCGACGTCTGCGGTCAAGGGTTTTCTAGGACAGACAAACTCAAGATCCATTATAGGAAGCACACTGGTGAGAAACCTTACTCCTGTGTTTATTGTAGCAAGAGCTTTATCAAAAGGGATTACTTGATCATGCACGAGCGAATACATAATGGAGAAAAGCCCTACGTTTGTGATATTTGTGGACAGAGCTTCAACCAAGGAGCTCCTCTGAGGATTCATATACGCACTCATACCGGcgaaagaccctatatttgTCCGCATTGTAATAACGGgtttttTCCTGCCTTAGAAGTAGAATTGAAGGTGGACGATGACGACTATGATGTAAAGGATttctacaaaaagaaaaaggtGTCCGAGAAATGTTTACCCATCAAGAAGAAAATCAAAGTCGAACTTGACGATGAATATACTCCACCCggatacaaaaagaaaaagaacaGAGTAAAAAATACGTCACAGAAGAAGATAAAAAAGCAAGAACATAAAATATGGACCTGCAGGAGGTGTTTGGACGAATTTGAATCGAGAAGAGATTTAACTGAACACACTAAACTTCATCATCCTGACGAACCGAAGGATCAGCACACGTTCAAGTACGATGACGAGCAGGACTTGTACACTTGTAGTACTTGTTCGGCAGAATATCAAACAAAAGGAGAAGTGGAGCAACACATAACGAAAGTGCACGAAGAATTTTACACGTGCGAAGTCTGTAAACACACTTCAAAGAAAGCCTACAGCTTTGCTGTTCATATGAAAGGCCATAGTACCGATGACAATTACACGTGTCCTCTGTGCAACTATAGTACACCTCGGAGAACATGCCTTCAAACGCATATAAATAGAGTGCACTACCACAAATTTTACTACACTTGCCCAACTTGCGGAAAAGGATTTAATGATTCAGTTATATTCAAAGAACATAACAACGAACATTTAGGCATAAAACCTTTCATCTGTGTCGTGTGCAACAAAGAATTTGTTTATTCCAGATATATGCTCATACATCAAACGAGATACCACACGGTTCACATCGAAGGAACCCTCCACAAAACTCAGTGCAGCATATGCTTGAAGGTGTTTAGTAAAGTGGCCACATTATTGAAACACATCACAACTAAGCACAGTAATTCGGGAGACGATAAACCTGAGAAACGCCATCTGTGCGATATGTGCGGTAAAGGATTCGGCACATCggacaaattaaaaatacattatagaaTACACACAGGCGACAAACCCTTCAGTTGCCGCTATTGCGATAAACGATTTACGAAAAAGGATTATCTGGTAATGCATGAGAGGGTCCATACAGGCGAAAAGCCGTACCCCTGTGAATACTGTGGGAAATGCTTCAATCAAGCTGCTTCCTTAAGGATTCACGTGCGTGGACACACTGGAGAAAGACCCTATGTTTGCCAGTTCTGCAATGGAGGTTATATTTCTCGAGGTTCGCTTAATTtacatatgaaaatatgtaatgGAGTCACTGCCTAA
- Protein Sequence
- MKEPRLTLTPLHLPNCNHVSTKTYKCAELSVQDIKLFQIAFYSSENKVAEDNFIIKYITQSPPKRRRPRNPNNSLAREIYTRYGQLISDSSSGRHFNQEATKKTRRIEQTSPSSKKKKPKTSKTRYVPKQKPNQRARSWICKICFEEFTSRKSLFSHRKTVHDDTEELVTSEETEKFIYDKECDFYTCNNCSAEFQTKAEVEKHYEIHEEKYYCQICDESISGAFNFSSHLQQHREDKHFPCPLCSHVTSRKSAMLIHIVRLHFGKYDFQCQTCGKCFNDALTFKEHENLHLGLKPFVCIVCNKDFVYSRYLIAHQVRNHRVRVLDRESKTQCNMCSKIFARNETLAKHMVKKHLSYQEGPAEKKHLCDVCGQGFSRTDKLKIHYRKHTGEKPYSCVYCSKSFIKRDYLIMHERIHNGEKPYVCDICGQSFNQGAPLRIHIRTHTGERPYICPHCNNGFFPALEVELKVDDDDYDVKDFYKKKKVSEKCLPIKKKIKVELDDEYTPPGYKKKKNRVKNTSQKKIKKQEHKIWTCRRCLDEFESRRDLTEHTKLHHPDEPKDQHTFKYDDEQDLYTCSTCSAEYQTKGEVEQHITKVHEEFYTCEVCKHTSKKAYSFAVHMKGHSTDDNYTCPLCNYSTPRRTCLQTHINRVHYHKFYYTCPTCGKGFNDSVIFKEHNNEHLGIKPFICVVCNKEFVYSRYMLIHQTRYHTVHIEGTLHKTQCSICLKVFSKVATLLKHITTKHSNSGDDKPEKRHLCDMCGKGFGTSDKLKIHYRIHTGDKPFSCRYCDKRFTKKDYLVMHERVHTGEKPYPCEYCGKCFNQAASLRIHVRGHTGERPYVCQFCNGGYISRGSLNLHMKICNGVTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00328436;
- 90% Identity
- -
- 80% Identity
- -