Basic Information

Insect: Rosalia funebris
Gene Symbol: -
Assembly: GCA_037954035.1
Location: JAZFAV010000009.1:22561729-22567491[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00027 0.033 16.4 0.8 1 23 10 32 10 32 0.98

2 17 0.01 1.2 11.4 0.5 2 23 39 61 39 61 0.92

3 17 0.00013 0.015 17.4 0.9 1 23 66 88 66 88 0.96

4 17 0.097 12 8.4 3.1 2 23 99 121 98 121 0.93

5 17 3.7e-05 0.0044 19.1 1.7 1 23 128 150 128 150 0.98

6 17 5.4e-07 6.4e-05 24.9 1.1 2 23 157 178 156 178 0.98

7 17 3.4e-07 4.1e-05 25.5 1.6 1 21 184 204 184 204 0.97

8 17 2.9e-05 0.0034 19.5 0.9 2 23 236 257 235 257 0.94

9 17 1.6e-05 0.0019 20.3 2.8 1 23 263 285 263 285 0.98

10 17 0.0025 0.3 13.3 0.4 1 23 291 313 291 313 0.97

11 17 0.0021 0.25 13.6 0.5 2 23 320 342 320 342 0.94

12 17 0.00013 0.015 17.4 0.9 1 23 347 369 347 369 0.96

13 17 0.28 34 6.9 5.1 2 23 380 402 379 402 0.90

14 17 6.5e-05 0.0078 18.3 0.6 1 23 409 431 409 431 0.98

15 17 3.4e-07 4e-05 25.5 0.9 2 23 438 459 437 459 0.98

16 17 4.1e-07 4.9e-05 25.3 4.3 1 23 465 487 465 487 0.98

17 17 0.00054 0.065 15.4 0.2 1 23 493 516 493 516 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00027	0.033	16.4	0.8	1	23	10	32	10	32	0.98
2	17	0.01	1.2	11.4	0.5	2	23	39	61	39	61	0.92
3	17	0.00013	0.015	17.4	0.9	1	23	66	88	66	88	0.96
4	17	0.097	12	8.4	3.1	2	23	99	121	98	121	0.93
5	17	3.7e-05	0.0044	19.1	1.7	1	23	128	150	128	150	0.98
6	17	5.4e-07	6.4e-05	24.9	1.1	2	23	157	178	156	178	0.98
7	17	3.4e-07	4.1e-05	25.5	1.6	1	21	184	204	184	204	0.97
8	17	2.9e-05	0.0034	19.5	0.9	2	23	236	257	235	257	0.94
9	17	1.6e-05	0.0019	20.3	2.8	1	23	263	285	263	285	0.98
10	17	0.0025	0.3	13.3	0.4	1	23	291	313	291	313	0.97
11	17	0.0021	0.25	13.6	0.5	2	23	320	342	320	342	0.94
12	17	0.00013	0.015	17.4	0.9	1	23	347	369	347	369	0.96
13	17	0.28	34	6.9	5.1	2	23	380	402	379	402	0.90
14	17	6.5e-05	0.0078	18.3	0.6	1	23	409	431	409	431	0.98
15	17	3.4e-07	4e-05	25.5	0.9	2	23	438	459	437	459	0.98
16	17	4.1e-07	4.9e-05	25.3	4.3	1	23	465	487	465	487	0.98
17	17	0.00054	0.065	15.4	0.2	1	23	493	516	493	516	0.96

Sequence Information

Coding Sequence: ATGAAGATCCATGAAGGATCCAACTCCTTCGAATGCGAAATCTGTTCCAAGAAATTGAGATCTAAAGGTTCCTGGATGATCCACAGAAGAAGGCACTTAAAGGACTATATAGCAAAATGTGAACTATGCAACCAAGGATTCGTTACGAATCAGGAATATAATAATCATGTGGGATCGAAGCATAGAGCAAGTAAACATATATGTGACGTCTGTGGTAGAAGTTGTTACGACAAGGCTGCTTTACAGGGTCATATGGCGCGACATGCCAAAGATTATGAAAAGAACCAAAACATCAGATGTGAATTGTGCAGTAAGACGTTCCTCCAAGAAAAATACCTAAAGCACCACTTCCTTCGAATGCACAAGAATGGGGGACAGCGCTTCGTCTGCGACCACTGTGGGAAAAAACTAAATTCGAAACGAAGTTTACGAGATCACTTGCTCATCCACGAGGGAAAGAAGCCAATACAGTGCAAGGAATGTGGCAAAAGTTTTGTCTTAAGAACGACACTAAAACTACACATGCGTACTCACACTGGCGTTAGACCGTATGCGTGTCCCCATTGTGGGAAATGCTTTACACAAAAGTCTCCTTTGACGGTGCACATGAGgtgTAATACGGATAAAAAAGGCATTATTAAATTGGAAAGCTTAGAACCACATGTAAGATCCATTGATCAAAACCTACAAGaggttaaaaagaaaatgtgtaaCATATGTGGTAGATCCTTTAAAGACATTAGGTATTTAAGAAAACATCTTACCGCTCACAGCCAGGAAAGACCATTTTCCTGTAAACtttgtgataaaaaatttaaacgtAAACAGCAAGTGTCTGAGCATATGAAAATCCATGAGGGTTCTAATTGTTTCGATTGCGAAATCTGtgccaaaaaattaaaatctaaaggTTCCTGGATTATCCATAGAAGAAGACACTTAAAGGACTACATAGCAACATGTGAATTATGCAACCAAGGATTCGTTACTAATCAGGAATATAATAATCATATGGGATCGAAGCATAAGGCGAGTAAGCATATATGCGACGTCTGTGGCAGGAGCTGTTACGACAAGGCTGCTCTACAAGGTCACATGGCGCGGCATGCAAAAGACTACAAAAAGAACCAAAATATCAGATGCGAATTGTGTCATAAGACGTTCCTCCAAGAAAAATACCTGAAGCACCACTTTTTTAGAATACACAAAAATGGTGGGCAACGATTCGTCTGCGACCATTGCGGGAAAGAAGTGAATTCGAGACAAAGTTTGCGAGATCACTTGCTCATCCACGAGGGGAGAAAACCGATACAGTGCAAAGAATGCGGGAAAAGTTTTGCCTTGAAGACCACGTTAACACTACACATGCGTACTCACACCGGCGATAGACCATATGAATGTCCTCATTGTGACAAATGCTTTACACAAAAATCTCCTTTGACAATACACTTGAGGTACCACACTGGTGAACGGCCCTATATATGTAATGTTTGTGAAACTGGATTTGTTAGCAAGGCTGCTTTATCGTTACATcagaaaaataaacataaagcCATATAG
Protein Sequence: MKIHEGSNSFECEICSKKLRSKGSWMIHRRRHLKDYIAKCELCNQGFVTNQEYNNHVGSKHRASKHICDVCGRSCYDKAALQGHMARHAKDYEKNQNIRCELCSKTFLQEKYLKHHFLRMHKNGGQRFVCDHCGKKLNSKRSLRDHLLIHEGKKPIQCKECGKSFVLRTTLKLHMRTHTGVRPYACPHCGKCFTQKSPLTVHMRCNTDKKGIIKLESLEPHVRSIDQNLQEVKKKMCNICGRSFKDIRYLRKHLTAHSQERPFSCKLCDKKFKRKQQVSEHMKIHEGSNCFDCEICAKKLKSKGSWIIHRRRHLKDYIATCELCNQGFVTNQEYNNHMGSKHKASKHICDVCGRSCYDKAALQGHMARHAKDYKKNQNIRCELCHKTFLQEKYLKHHFFRIHKNGGQRFVCDHCGKEVNSRQSLRDHLLIHEGRKPIQCKECGKSFALKTTLTLHMRTHTGDRPYECPHCDKCFTQKSPLTIHLRYHTGERPYICNVCETGFVSKAALSLHQKNKHKAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -