Rfun047048.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000027.1:2516890-2519364[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 7.4e-15 2.5e-11 45.2 1.2 3 44 51 91 49 91 0.96 2 9 3.5e-14 1.2e-10 43.0 7.4 1 44 183 225 183 225 0.96 3 9 6.5e-11 2.1e-07 32.6 5.5 3 44 265 305 263 305 0.95 4 9 1.1e-10 3.7e-07 31.8 6.3 1 44 341 383 341 383 0.95 5 9 0.049 1.6e+02 4.1 1.2 21 44 421 443 414 443 0.69 6 9 9e-09 3e-05 25.7 1.7 2 44 475 516 474 516 0.95 7 9 3.8e-07 0.0013 20.5 1.6 2 38 566 602 565 608 0.75 8 9 3.6e-06 0.012 17.4 2.1 3 43 638 677 636 678 0.93 9 9 1.5e-10 5e-07 31.4 7.1 3 44 728 768 726 768 0.95
Sequence Information
- Coding Sequence
- ATGGTAGATAGAGGTGATAATTATTTGCGAATATCCGAAGAAAATGAGTTGTCGGAAATATCCGGAGAAGTTTCTGTACATACAGGTTCTGATGAATGGAATCATAACCAACTTCAAGATGAAGGAGCTAAGAAACGTTCCAGGAGTTTTGTCTGGAATCATTTTGAAAGGGGAAGTGTGTCACAGAAAGCGATATGCAACTATTGCAAAGAGGAATACGTTACCGGCGGCAACACGACCAATTTAAGAAATCACTTAATGAGATTTCATAAAAGGGAGGTAATGAAAGATGTCGAAGAGGTAAATTTGAGACCAAGCGAGATTTTATTATccaacgatttttttaaaaaagaaaagggAACGGAAGGAACAAACACggaaaataaagattatttgaAAGCCTATAATGAGCTGTTATTGACAGACAGTTGTATAATTGAATATGAAGATACAAATGTAACGGCTCAAGATGACAATAAGAAATTTGAGTTTGCATTTAACCAAGATACGCTGAATGGAAACAACAGGTCTAAAAGAAAACGCAAAAGTGTGGTGTGGAATCACTTCGAGAAGAATGAAAAGTCCCACACAGCTGTGTGTATTCACTGCGGAAACATCTACAATACAAGTGGTAACACATCAAATTTATGGAACCATTTATTGCGACATCACAGGGAAGAAACTGAAGCATCAGACGAAGAAAACCTAGACCAGTTGCAGACCGAAGAGCTTTCATTACCAGAGGATAACTCAGAAGAGGAGAAAACCCCTAAGAACAGATGCAGGAGCATCGTATGGAACCATTTCGAAAAAAGCGACGTTCCCAGAATAGCAACTTGCGTTCATTGCAAGGAAGAATGTAATTCCAGCGGCAATACGACCAATCTATGGACTCACCTAATGAGGCATCACAAGGAACAAATTGGAGTACGCGAAATAGACCCTGAGCAGATCAAAACTgatatttctttaattgaaGACATCTCAAATGAACATAAGGTGTTTAAAAAGCAACGCAGGAGTGCGATTTGGAACCACTTTAAAGAAAGTGGGGAAACAAAGAAGGCGATTTGCGTTTACTGCAATGAACACTGTAATACCAGCGGGAACACTACAAACCTATGGACACATTTAATGCGGTACCACTCAGAGCACATTGCACTGCCTGAGGAAGAAACTGATCCATTGAAGACGAATGAGTGTTCCGTTGATAATATTTTGGATGAGGACGAAAGCACGCCATGTGAGGAAATATACATTTACTGTGACAAAGAACACAAAACATTCGTTAATACTAATTTGAAATCTCACTTGATGACACACCATCAGAGCTTGATAAATTCTAACGTGGATAAATGTGGGAACCATGTGAATGAGCTATATCAGACGCAGGAAACCACATCAATTAGATATAAAGACAATCCTGTGTGGGGCTACTTCAAAAAAATCGTAACCCCTCAGTTTGCCGTGTGTAATTTCTGCCACATGTGGTGCGAGACTACTGGAAACTCATCTAACTTGAATGACCATCTAATGAGGTATCACAAAAAGGATATTGCGGGAAAGGAACTTAATAGATCAGAAAAATCTCCTACTAAAGAGTGTACTGAAGCTCGTGATGACCAACAGGTTGATGTCAGTGACTTTTTGGGGTCTGTAAATGGAGGAGTAGAATCAAAACTGGTGGATGCAGACACGATTTGGAAACATTTTGAGCAGAGCCCAAATTTCTCGCAATTTGCCGCCTGTAATCATTGCAATAAACTATGTAAGATAAGCGAGGACGCCATAAGCTTAGTGATCCATTTAATGAACCATCACGAAGGTGTGTTAGAGGATAATAAAGCTTTGATAAAGAGTAAAAGGCGAACAGACACCAGCCCTTTCACCGAGGACAATTTGAAGAGTTTCGTTTGGGACCACTTCGAGCGATCAAGGACTCAACGTTTGACCGTGTGCAATTACTGCCCGAGGGAGTTCAACACGTACAAATACTCGGCTAGTTTGCTACATCACTTGACGAACCGTCATGGAGAAATGATAGACAACGAACGTCTGGAAAAGATAAGGAACGTAACGCCTGCCAAGGAGGGTGGAAAGGGGGTGTACCTTCACGATTTCGCATCACCTGAGGAGGTGTTGGGCGCCACGAGTGTACGCAACAGGTCGTCTTCGAGTTTTGTGTGGTGTCACTTTACGCGGAGTAAAATTCCTCAATTTGCGATATGTAATCActgtaaaaaattgtgtaatacGTACGGCTCGACCTCTAACTTAAGGGACCACTTGATGAGGTACCACAGGGAACTGATCGTAGTGGAAAGTGAACGTATTTCAGATCAGGAGGACTTGGATATTGAAGAAGAGACGGACTGTAAAGTTGAACGGTTAACCACTGAAGAAATTATAACGAATGGTATAGATTCGGCAAGTGCCGCTGGCTTAGACGAGTACGTAATATTAGTAGTGAGTTAG
- Protein Sequence
- MVDRGDNYLRISEENELSEISGEVSVHTGSDEWNHNQLQDEGAKKRSRSFVWNHFERGSVSQKAICNYCKEEYVTGGNTTNLRNHLMRFHKREVMKDVEEVNLRPSEILLSNDFFKKEKGTEGTNTENKDYLKAYNELLLTDSCIIEYEDTNVTAQDDNKKFEFAFNQDTLNGNNRSKRKRKSVVWNHFEKNEKSHTAVCIHCGNIYNTSGNTSNLWNHLLRHHREETEASDEENLDQLQTEELSLPEDNSEEEKTPKNRCRSIVWNHFEKSDVPRIATCVHCKEECNSSGNTTNLWTHLMRHHKEQIGVREIDPEQIKTDISLIEDISNEHKVFKKQRRSAIWNHFKESGETKKAICVYCNEHCNTSGNTTNLWTHLMRYHSEHIALPEEETDPLKTNECSVDNILDEDESTPCEEIYIYCDKEHKTFVNTNLKSHLMTHHQSLINSNVDKCGNHVNELYQTQETTSIRYKDNPVWGYFKKIVTPQFAVCNFCHMWCETTGNSSNLNDHLMRYHKKDIAGKELNRSEKSPTKECTEARDDQQVDVSDFLGSVNGGVESKLVDADTIWKHFEQSPNFSQFAACNHCNKLCKISEDAISLVIHLMNHHEGVLEDNKALIKSKRRTDTSPFTEDNLKSFVWDHFERSRTQRLTVCNYCPREFNTYKYSASLLHHLTNRHGEMIDNERLEKIRNVTPAKEGGKGVYLHDFASPEEVLGATSVRNRSSSSFVWCHFTRSKIPQFAICNHCKKLCNTYGSTSNLRDHLMRYHRELIVVESERISDQEDLDIEEETDCKVERLTTEEIITNGIDSASAAGLDEYVILVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -