Rfun043987.2
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000025.1:2465423-2465902[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-10 1.1e-07 33.2 0.0 5 39 1 35 1 39 0.92
Sequence Information
- Coding Sequence
- ATGGTTTTAGCAGTTAAGGCGGTTAGACAACATACTATGGGGTATAAGAGAGCGGCAAAACAGTTTGGTGTTCCAAAAGGAACTCTCGAACGTTATGTGAAAAACATGAACTTTTCGCCTGAACAGCTGGTTACAGAGTCTCTTTGCAGAAAACCTGCATTAGGCAAAGAAATAGAAGGCGAGCTGGTTCAGTACTGTCTTGCAAtggataaaagatattttagtTTGCGAAGGTCGGACGTAAAACGAATGGCGTTTGAGTTAGCCATTTCTAATAATCTTCGCCATCCATTTTCAGAAGGAGCCGCTGGAAAAAAGTGGCTTCGAGGTTTTTTGAAACAGCACCCAGAACTCTCCGTTAGATCTCCTCAAGCTATTTCCAATGCACGCATACGAGGTTTTAATCAAGAGAGCGTTGcagaattttttgaaatatatgaacaaGAATTCCGAAAAATAGGCACAAAACCACATAGATAA
- Protein Sequence
- MVLAVKAVRQHTMGYKRAAKQFGVPKGTLERYVKNMNFSPEQLVTESLCRKPALGKEIEGELVQYCLAMDKRYFSLRRSDVKRMAFELAISNNLRHPFSEGAAGKKWLRGFLKQHPELSVRSPQAISNARIRGFNQESVAEFFEIYEQEFRKIGTKPHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01310312;
- 90% Identity
- iTF_01310420;
- 80% Identity
- -