Rfun015883.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000009.1:29506016-29507739[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.4e-12 1.6e-09 39.0 0.0 9 43 41 75 38 76 0.91
Sequence Information
- Coding Sequence
- ATGTTGGCTGCGACTGGACCTCTAATCTTATTAACCTCACCAAAGAATAATGCTAGAAAATACACACCGAAGTTGGGGCGCTGCCAGTACAAGGATTACTCTGAACAGGATCTTAGATCTCTGGATGCTGTTGCCAACGGAGAGATGTCAATAAGGCAAGCTGCATCAAAGTTCAACATCCCAAGAAAGACCATtagtaaaacattcaaaataaaGAACACAAAGTCTGTTGGTCACCCTGCACTTTCTCTAGCTGAAGAGTCTGCAATTCTACACCAAATCCTTGTATGTGCTGACTGGGGGATGCCATTAGGTGCTTTGGAAGTTATACTAATCGTGAGAGACTACTTGGTGACATGTGGCCGAGGTGTTATgaattttaaaggcggtaacCCGCCAGGAGAAGATTGA
- Protein Sequence
- MLAATGPLILLTSPKNNARKYTPKLGRCQYKDYSEQDLRSLDAVANGEMSIRQAASKFNIPRKTISKTFKIKNTKSVGHPALSLAEESAILHQILVCADWGMPLGALEVILIVRDYLVTCGRGVMNFKGGNPPGED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01310282;
- 90% Identity
- -
- 80% Identity
- -