Rfun031120.1
Basic Information
- Insect
- Rosalia funebris
- Gene Symbol
- -
- Assembly
- GCA_037954035.1
- Location
- JAZFAV010000018.1:8373484-8381352[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-11 4.2e-09 37.7 0.0 4 34 21 51 18 61 0.87 2 2 0.71 1.8e+02 3.7 0.0 23 40 106 123 87 128 0.83
Sequence Information
- Coding Sequence
- atgtcaCCAAAATACAAACCGAAGTTGGGGCGCCGTGAATACAAGGATTATTCTCAACAGGACCTTGAAGAAGCTCTGAATGCAGTTGCCAACGGAGAGATGTCAATAAGGCAAGCTGAATCAAAGTTCAACATCCCAAGAAAGaccattggcaataaattcacaggAAAGCACACAAAGTCTGTTAGTCACCCAACTACAATTTCTCTAGTTAAAAAGTCTAAAAATCCTCCACCAAATTCTTGTACGACTCAGAAAAAACTGGTCGAAAACATAACATCGGTTTATGAAAGTGGAAGGTCGCGTGATGAAGTTTGTGACGAATTTAATGTTCAGAAGTCTACTCTCTGTAGAATCATCCAGAATAAAGGCAAAATTCAGAATCAATGTGCTGAAGGACAAGGAGAACTAAAACGAATACCCTTATCAGAGTATCCGGAACTAGAAAAGTGCTTGATAATATGGATAAAACAACTTCGGAATAAAAGAAACTCTAATAAGTGA
- Protein Sequence
- MSPKYKPKLGRREYKDYSQQDLEEALNAVANGEMSIRQAESKFNIPRKTIGNKFTGKHTKSVSHPTTISLVKKSKNPPPNSCTTQKKLVENITSVYESGRSRDEVCDEFNVQKSTLCRIIQNKGKIQNQCAEGQGELKRIPLSEYPELEKCLIIWIKQLRNKRNSNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -