Rped013755.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:146002210-146052079[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.4 78 4.1 1.0 1 16 1212 1227 1212 1229 0.74 2 10 0.017 0.97 10.1 1.5 3 23 1358 1379 1357 1379 0.97 3 10 0.0064 0.37 11.4 4.2 1 23 1385 1408 1385 1408 0.97 4 10 0.022 1.3 9.7 0.2 2 23 1415 1437 1414 1437 0.92 5 10 0.56 32 5.3 0.2 2 23 1444 1466 1443 1466 0.90 6 10 0.13 7.5 7.3 2.6 2 23 1473 1495 1472 1495 0.93 7 10 0.0014 0.082 13.5 1.7 2 23 1502 1524 1501 1524 0.93 8 10 0.00052 0.03 14.9 2.5 1 23 1530 1553 1530 1553 0.94 9 10 0.00051 0.029 14.9 1.1 2 23 1560 1582 1559 1582 0.95 10 10 0.0093 0.54 10.9 0.3 2 23 1589 1611 1588 1611 0.95
Sequence Information
- Coding Sequence
- ATGAATAATTCTGTTAGTACTAGACTTCCTGTTTCATCTCATGAGGGATCTACTTCTATCCGAGAAGAATATCTTCCTAGTGTTGGGAACAACCTTCCTTCCACTTCAGTACCTACAACTGGGGCGAATGAAGCCCCATCCAGCCATGCTGAAAAAGACCCAATTATGATTTTCAGTTTACTAAGCACCACTGTAGATGACCGCTTCGTTGGAATCTGCCAGGACACAAATTTCATTGCATTGAACAGGAAGATAAGGAATGTTAAGCAGACTACCATTATGAAATATGACGGAGCAAATAAAGCTTGTATACCAATACCTGTACTTTGTCATCTAACACCACATGAAGATGGAGTGTTTGTGATGCAGATATTAAAAGATGAACTCAAAAGCAGCCAGGAATTGATGGCCAATGCTGTGAAGGCATGTAAAGGTCCCTTCAATGATATTAACGAAACTATACTGAAACTATCTAACATCGAATTTTTAGGAATAAATGATAAACAACTGGAAAACAAATCAAATGGTGGTGAAAAGAATCAAGTTAGAAATCCTAACCCAATAGATTTCTTTGAACAAATTGGGATATCGCTCTTACAGTCTGCTGAAATGTATAATCAAACCTGTAGGAATGAACTGCTACCTACAACGGAGAGTGAATTGGAGAAACAGGGACCTTGTACTAACTTGTTGCAGCTAGAAGCAGATAGACAAGAGTGTAATGAAAGGGTTAAAGCTTCAAGTGGGCAACCTTCTTTCAGATCACCACAAGAAATGACCAATTGCCATAAGCAAATTACCAAATACAGCAAGAATCACAGCCTTTCTCAGCACAAAGATGGATCTCTGAAAAAACCAAATCCTCTGAGGGACTTACTAAAAAAATTCTTCAAGCTAAGGCTTAAATTATCGGAAAATGTGTCCCAGTTAAGTGAAAAAACCTCTCACAATTATTCTTTGCCCAACAATCACTGTTTAGTGTCTGCTAAAAGACAACCTGCTGTTAAGATGAGTCAAAGTTCCTTTCAAGAGAAAAAATCAGTGAACATTACTAAGCCTGTATCTCCCTTGAGAACTGTACCAGAATTGGATAATTCTACCTCCAATCAAGGTGTTAAACCAAGTTTAACACCTCGTCAGTTTCCACCAGTACAAGATGCGAAGAGTAGCAAAAAACGAGACTCAACACAAGCCGGATTTAATTCTGAAGATGTTTTTCAACCAACACCCCCAAAATGTGCTCGAATTTCCGTGAGAAAAGATTTGATGCAGAATCATAAACTTGACATTCCTAACCAAACTTCTAACCCAAAAGATTTTATAGTTCCTTCGGATCAATGTCAAGAAAAATCTGCACTAAGTAGTAATCATAGAGTCCCCATTCATAACGATGCTTCTACCACGAAAGATTTTATAATTCATACGGCTCAAAGTCAAAGAAAATCTGCATTAAGTAATAATCATAATGTTGCCACTCCCAACCAAACTTCTATCCCAAAAGATTTTATAGGTCCTACGGTTCAAGGTCAAGGAAAATCTCCATTAAGCAGTAATCGTAAAGTGACCATTTCTACCCAAACTTCAACCCCAAAAGATTGTATAATTCCTATGACTCAATGTCAAGGAAAGTCTGCATTAAGTAGTTATAATTATGTCATTACTAAGCAAATATCTAATCAAAAAGATTTTATATATCAAACGACTCAAAGTCAAGGTAAATCTGCACTAAGTAGTAATCTTAACATTCCCATTCCTAACCAAACGTCTAATGCGAAAGATTATATAGCTCCTATGGCTCAATGTCAAGGAAAATCTACGTTAAGCAGTATTCATAAAGAGACCACTGCTAACCAACCTTCTAACCCAAAAGCTTTTATAGCTCATACAGCCCAATTTCAAAGTAGATCTGCATTAAGTAGTAATCTTAACATTACCACTCCTAACCAAACTTCTAATCCTAAAGTCTCTATAGCTCCTTCAGCTCAATGTCAAGGAAAATCTCCATTAGGTAGTAATCATAAAGTGACCGTTTCTACCCAAACTCCTAACTCAAAAGATTTCTTAATTCCTATGACTCAATGTCAAGGAAAATCTGCATTAAGTAGTAATCTTAACGTTCCCCCTCCTAACCAAACTTCTAACCCAAAGGTTTTTATAGCTCCTACAACGCAAGGTCAAAGTAAATCAGCATTAAGTAGTAATCTTAACATTGCCACTCCTAACCAAATTTCTAACCCAAAAGATTTTATGGCTCCTACGGATCAATGTCAAGGAAACTCTGCATTAGGTAGTAATCATAAAGTGACCGTTTCTACCCAAACTCCTAACTCAAAAGATTTCTTAATTCCTATGACTCAATGTCAAGGCAAATCTGCATTAAGCAGTAATCATAATGTGGCCATTCCTAACCAAACTTCCTATCCAAATGATTTTATAGCTCCTACGGCTCATTGTCAAGGTGAATTTGCATTGAGCAGTAATCATAAAGTAACCGTTTCTAGTCAAACTTCTATAAAAGATTTTATAATTCCTACGACTCAGTCTCATAGAAAATCGGCATTAAGCAGTAATCAAAAAGTGGACATTCCTAACCAAACGTCTAATCCAAAATATGTTATAGCTCCTATGGGTCAATGTCAAGAAAAATCTGCATTAAGTAGGAATCATAATGTGGCCATTCCTAAGCAAACTTCTAATCAAAAAGATTTTATTGGTCCTCTGACTCAGTGCCAAGGAAAATCTGCAATAAGTAGTAATCTAAACGTTGCCACTTCTAACACAAAAGTTTTTATAGCTCCTACAACTCAATATCCAAGAAAATCTTCATTAAGTAGTAATCAAAGAGCGCGCTTCCATAACCAAACTTCTATTAAAGATTTTGTAATTCCTACCACTCAATGTCTTGGAAAATCTGCATTAAGCAATAATCATAACGTGACCATTCGTAACCAAACTTCCAACCTAAAAGAATTTATAACTCCTATGACTCAGTGCCAAGGGAAATCTGCATTAAGCAGTGATCTCATAGAGGACATTCCTAACCAAACTTCTAGTCCAAAAGATTATATAGCTTCTACGGCTCAATGTCAAGGAAAATCTCCATTAAGGAGTAATCGTAAAGTGAACATTCCTAAAGAAACTTCTAACCCAAAAGATTTTATAACTTCTCTGACTCAAAGTCAAGGAAAATCTTCAGAACTTCCCGAAGAATGTATCGAAAATAGTCAAGTCCAGAGCCATAATAATCATGATACCCTAGCAGGTATCCCCAGTGATAGTGTTGCCAAAACGAAAATAGTACAAACTGTCAGTTTAAATTTGGAATCGAGTAACCAAAATGAAGAGGTGAGCATTCCAAGGAGTTTGGTAGTTGGAGATCCTTACACCCAGCTTTTGATAAAGTCAAGACTTAATCCAGTTGTCGTGCTTAAAGACATATATCGAGACCCGATTTTTTGTCACAAAAATCCATTTTTTGGGTTTCTAGATCATGAAAAGGATTATTCTTTCGACAAGCTTCTGCAGTTCCAAAACCAAATTAATTTTGACAAGGGAGATTCAGTTAAAACAATGGATCATAAATCTACTACTCCAACAAAACAACATTTGCCGTCATTTTTAGCTGAAGAAAAATATGTCTGCCACTACTGTCAGAAAACATGGAAATCCTTTACCTCTCTCAAGTCCTGTGTCAGGAAGTGTTTTCATCGTACAATTAGGAGTGAAGAAAAGTATGTCTGCTACTACTGTCAGCAAAACTGGAAATCCTTCACCTCTCTCAAATCCTGTGTCAGGAAGTGTTTTCATTATACATTTAGAAGGACATCATTGGGTGAATTCATGCCTCGGCATATACGGAAAAAAGGCATTTCAGTTTTGAAAAGTCGTCCCTCTGACAAACAACATAATGTTGAAAACCCGAGAAAAAGCATCAATTTTCAGACAGTGACAAAGAAAAAAAGTTACTCTAACAAAACACCTGTTAAGTCCAGTCAGTTAAAATTGAAATTCCATATAAAAACCAAAAACACCAAACACAAAGTAAAGCAAACAGAAGGACCAGTTAAGAATTGCCCTCATTGCAGCTATTCTACTAGTGAAAGTTCTATCCTAATGAAACATTTACGCACTGAACACAGTGATGAAAGACCTTTTAGCTGCCCTCACTGCGATCACTGTACTGTTGGGTCTACAGCACTGAGAAATCACATAATGTCAAAGCACACAACGGAAAGACCAAATAAATGCCCTGATTGCAAGTATTCTACTGTTGGCGCTACGGCACTCAGAAATCATATATTCGCTAAACACAAAAATGTAAAACCTTTGAAATGCCCTAAATGCGATTATCGTGCTGTTGGGACTTCAACGATGAAGAATCATGTACTCGCGAAGCATACAAAAGTCAAGCCTATGAAATGCCCCTACTGTCATTTTTGTTCGGTTGGCGCTACAACACTGAAGAACCACATAACTGCAAGGCATACCGATGAAAAACCTTTGAAATGTCCACAGTGTGATTATTGTACTGTTACACGTACGACGTTAAAAAATCATATAATTGGAAAACATACTAAAGAAAGACCTTTCAAATGCACTGATTGTGATTACTGTGCTTCTGAGCAAAGCACACTAAAACGTCATATAACCGCAAAGCATACAAATGAAAAACCAATGAAATGCTCCTATTGTGACTATTCTACTGTACAGCGTGGTACACTGAAGCGTCATGAACGGGCAAAGCATGCAAAAAAAAAACCTTTATATTGTCAAGACTGTGATTATAAGACTAATTCGCTAGCTCGTTTAAAGAGCCACATGTTGATTGTACATGGAAAACCTCCGACACAAGCATAG
- Protein Sequence
- MNNSVSTRLPVSSHEGSTSIREEYLPSVGNNLPSTSVPTTGANEAPSSHAEKDPIMIFSLLSTTVDDRFVGICQDTNFIALNRKIRNVKQTTIMKYDGANKACIPIPVLCHLTPHEDGVFVMQILKDELKSSQELMANAVKACKGPFNDINETILKLSNIEFLGINDKQLENKSNGGEKNQVRNPNPIDFFEQIGISLLQSAEMYNQTCRNELLPTTESELEKQGPCTNLLQLEADRQECNERVKASSGQPSFRSPQEMTNCHKQITKYSKNHSLSQHKDGSLKKPNPLRDLLKKFFKLRLKLSENVSQLSEKTSHNYSLPNNHCLVSAKRQPAVKMSQSSFQEKKSVNITKPVSPLRTVPELDNSTSNQGVKPSLTPRQFPPVQDAKSSKKRDSTQAGFNSEDVFQPTPPKCARISVRKDLMQNHKLDIPNQTSNPKDFIVPSDQCQEKSALSSNHRVPIHNDASTTKDFIIHTAQSQRKSALSNNHNVATPNQTSIPKDFIGPTVQGQGKSPLSSNRKVTISTQTSTPKDCIIPMTQCQGKSALSSYNYVITKQISNQKDFIYQTTQSQGKSALSSNLNIPIPNQTSNAKDYIAPMAQCQGKSTLSSIHKETTANQPSNPKAFIAHTAQFQSRSALSSNLNITTPNQTSNPKVSIAPSAQCQGKSPLGSNHKVTVSTQTPNSKDFLIPMTQCQGKSALSSNLNVPPPNQTSNPKVFIAPTTQGQSKSALSSNLNIATPNQISNPKDFMAPTDQCQGNSALGSNHKVTVSTQTPNSKDFLIPMTQCQGKSALSSNHNVAIPNQTSYPNDFIAPTAHCQGEFALSSNHKVTVSSQTSIKDFIIPTTQSHRKSALSSNQKVDIPNQTSNPKYVIAPMGQCQEKSALSRNHNVAIPKQTSNQKDFIGPLTQCQGKSAISSNLNVATSNTKVFIAPTTQYPRKSSLSSNQRARFHNQTSIKDFVIPTTQCLGKSALSNNHNVTIRNQTSNLKEFITPMTQCQGKSALSSDLIEDIPNQTSSPKDYIASTAQCQGKSPLRSNRKVNIPKETSNPKDFITSLTQSQGKSSELPEECIENSQVQSHNNHDTLAGIPSDSVAKTKIVQTVSLNLESSNQNEEVSIPRSLVVGDPYTQLLIKSRLNPVVVLKDIYRDPIFCHKNPFFGFLDHEKDYSFDKLLQFQNQINFDKGDSVKTMDHKSTTPTKQHLPSFLAEEKYVCHYCQKTWKSFTSLKSCVRKCFHRTIRSEEKYVCYYCQQNWKSFTSLKSCVRKCFHYTFRRTSLGEFMPRHIRKKGISVLKSRPSDKQHNVENPRKSINFQTVTKKKSYSNKTPVKSSQLKLKFHIKTKNTKHKVKQTEGPVKNCPHCSYSTSESSILMKHLRTEHSDERPFSCPHCDHCTVGSTALRNHIMSKHTTERPNKCPDCKYSTVGATALRNHIFAKHKNVKPLKCPKCDYRAVGTSTMKNHVLAKHTKVKPMKCPYCHFCSVGATTLKNHITARHTDEKPLKCPQCDYCTVTRTTLKNHIIGKHTKERPFKCTDCDYCASEQSTLKRHITAKHTNEKPMKCSYCDYSTVQRGTLKRHERAKHAKKKPLYCQDCDYKTNSLARLKSHMLIVHGKPPTQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -