Rped000806.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000002:44167909-44178824[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.13 7.6 7.3 3.5 3 23 162 183 160 183 0.96 2 14 0.00065 0.037 14.6 0.7 1 23 189 212 189 212 0.97 3 14 0.012 0.71 10.5 3.3 1 23 218 241 218 241 0.97 4 14 0.0021 0.12 12.9 1.2 1 23 247 270 247 270 0.96 5 14 0.0003 0.017 15.6 2.3 1 23 276 299 276 299 0.96 6 14 0.024 1.4 9.6 1.2 1 23 305 328 305 328 0.96 7 14 0.04 2.3 8.9 2.0 1 21 334 354 334 357 0.94 8 14 2.3 1.3e+02 3.4 0.8 1 22 363 384 363 386 0.80 9 14 3.6e-05 0.0021 18.5 7.1 1 23 392 415 392 415 0.97 10 14 0.13 7.8 7.3 1.9 1 23 421 444 421 444 0.96 11 14 0.0002 0.012 16.2 0.1 2 23 451 473 450 473 0.96 12 14 0.019 1.1 9.9 5.1 1 23 479 502 479 502 0.97 13 14 0.19 11 6.8 2.9 1 23 538 561 538 561 0.96 14 14 0.029 1.7 9.3 2.6 1 23 567 590 567 590 0.92
Sequence Information
- Coding Sequence
- ATGACAAATACTTGCAAATATGAAGTTGACACAGAGAGACAGGTATACCTTAAACAAGAGGAAGAAAACATCCCTTTTTGGGATATACCACCTCCAGATTCAGAACTTCCTGAATGCGACAACTTCCAGACACCTCACTCAAACTATTTAGAACCTCAACTACACCAATCTCATGAAAATGGTAATTATTATTACTGTGCATATTGTGGATCTCGAGAATACAGTAGGTTCATGGTAAAATGCCATATATTCAAAAGGCATTTTCCAGTTGTGTTTGATACTGGAGAAGGATTGAAAAGAGTTTACATAGTTCCTCAGCTTCTAAAATATGAGCCCAAGAGTGAGAAAAAATCTAAAGAAAAACCTGCTTTTTTTTCTGAAATAGTTCGAAATGTCGATGATCAGACTCATACTGAAACATTTTTCTTCACGGCTAAAAAAATTAGAATCTCTACCAAGAAAGATGACAGTACAAAAATGCACTGTGTGCATTGTAATTATATTACCAGGAGGGCTGATTTTATGACATCGCATATATTAACAAAGCATTCTGGTGAAAGGCCATTTGCATGCAGTCTTTGCGAGTACAGAGGAAAATACAGTAACAATCTCAAGTTACACATGAGATCTATCCATAGTGATGAAAAGCCTTATAGCTGTCCACATTGTAGCTTTAGAGCCAAGCAACCTGTGCATGTTAAGTCTCATATTCAGAGGAGACATTCAGATGCTAGGCCTTACCCATGCACTCTTTGTAATTACCGAGCAAAAGTATTCAGCAGCCTGACTAAGCATATGAAAGACAGACATTCAGACATAAAACCATTTGCTTGCACAAAGTGCAATTTCAGATCTAAACAGAAAATAAATCTTGTTCGCCATATGAACTCTAAGCACTCTGATAAAAGACCGTTTTCTTGTTCTCAATGTGATTTCAAGTCGAAGCTTGAGAGCACTTTGAGGGATCATGTTCGAGCCAAGCATACAGACTTGAAGCCATATGCATGCCCATATTGCAATTATCGAGGAAAACAAGCAAATCATGTTACTTCCCACATACAGTGCATTCATTCTGATGAGAGGCCGTTCTCTTGTCCACACTGCAGCTTCACTGCAAAACTGTTAAACACAATCAAGTTACATATAATTGATAGGCACACTGTTGATAAACCCTTTTCTTGCCCTCATTGTGACTTCAAGTGTAAACAAAAAAGCAACTTAAGATCACATATAAAATCGAAGCATTGTTCAGAAAAACCATATCCTTGTTCAGAGTGTTGCTACAGAGCAAAACAACCTTGTGCTCTGAAAGCACACATTAGAGCCAGACATTGTAAAATAAAACCTATTCCCTGTCCTAAATGTGACTTCCGTGGTAAAACAAATGAAAATGTTAGACGGCACATTAGGATTGTCCATTTAGACGAAAAACCATTTACATGTTATCATTGTTCATATAGAGCAAAACAGTTTACTTATTTAAAAAGGCACATTAATAAAGTACATACAGATCAAAGACCTTCTAATTGCCAATTTTGTGTCTACTTCAATAAGCATTCCAAAGACTCTACCTGTGAAAAAAAGTATTGTACACATCCATTTGGTGAAAAATTCTCCTGTTTATACTGTGGATACCAAACTAAGAAACCAAACTGTCTTGAATTTCATATCAGAATCAAACATTTTAATGAAAAGCCTTATGCCTGTCCGTATTGTAGTTACCGGAGCAATCAGAAAAGCCATACAAAAGTGCATGTAACATTGAAACATTTACAGACATAA
- Protein Sequence
- MTNTCKYEVDTERQVYLKQEEENIPFWDIPPPDSELPECDNFQTPHSNYLEPQLHQSHENGNYYYCAYCGSREYSRFMVKCHIFKRHFPVVFDTGEGLKRVYIVPQLLKYEPKSEKKSKEKPAFFSEIVRNVDDQTHTETFFFTAKKIRISTKKDDSTKMHCVHCNYITRRADFMTSHILTKHSGERPFACSLCEYRGKYSNNLKLHMRSIHSDEKPYSCPHCSFRAKQPVHVKSHIQRRHSDARPYPCTLCNYRAKVFSSLTKHMKDRHSDIKPFACTKCNFRSKQKINLVRHMNSKHSDKRPFSCSQCDFKSKLESTLRDHVRAKHTDLKPYACPYCNYRGKQANHVTSHIQCIHSDERPFSCPHCSFTAKLLNTIKLHIIDRHTVDKPFSCPHCDFKCKQKSNLRSHIKSKHCSEKPYPCSECCYRAKQPCALKAHIRARHCKIKPIPCPKCDFRGKTNENVRRHIRIVHLDEKPFTCYHCSYRAKQFTYLKRHINKVHTDQRPSNCQFCVYFNKHSKDSTCEKKYCTHPFGEKFSCLYCGYQTKKPNCLEFHIRIKHFNEKPYACPYCSYRSNQKSHTKVHVTLKHLQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -