Rped005650.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000003:53700375-53706077[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0027 0.16 12.6 3.4 1 23 97 120 97 120 0.96 2 12 0.00033 0.019 15.5 2.5 1 23 126 149 126 149 0.96 3 12 0.19 11 6.8 5.4 1 23 155 178 155 178 0.95 4 12 0.0064 0.37 11.4 3.0 1 23 184 207 184 207 0.97 5 12 3.3e-05 0.0019 18.6 5.8 1 23 213 236 213 236 0.97 6 12 0.0017 0.098 13.2 4.3 1 23 242 265 242 265 0.94 7 12 0.0018 0.11 13.1 4.5 1 23 271 294 271 294 0.96 8 12 0.00028 0.016 15.7 0.9 1 23 300 323 300 323 0.95 9 12 0.13 7.4 7.3 3.8 1 23 329 352 329 352 0.95 10 12 0.13 7.6 7.3 2.6 1 23 358 381 358 381 0.94 11 12 0.059 3.4 8.4 6.9 1 23 387 410 387 410 0.96 12 12 0.0015 0.085 13.4 2.8 1 23 416 439 416 439 0.96
Sequence Information
- Coding Sequence
- ATGTATACTGGAATAGGATATTCCCTAAGGCATGTAAAGGAGGAAGCTCCTCTAGAAATTGCGGAGGATTTTGTAGAGCTGAAAGATGAAGGGAAGGCCGTCTTCATTTGCTATTACTGCCAGCGAGATTGGAACTCCTTCACTGGTCTCAAGGGATGTGTCAGGAGTTGCTTTGATCGCACAGTCAATAGGCCAATGAAGTGCTCATCTGCATCTCCTACAAACAATGATCGTTTGTTCTATAATTTGGAACATCACGACCTCTCTAGAAATACAAATGTCAAACCTCATTCATGCGCTCTTTGTAATTATAGTACTGTTAGGCTGAATAATCTAAAGCATCACATACTGTCTAAACATACAAATGACAAACCTCACTCCTGCCCCCATTGTGATTACAGTACTGCTGCACTCCGTAATCTAAAGCGACACATACTGTCTAAACATACAAATGACAAACCTCACTCCTGCCCCCATTGTGATTTTTGTACTGTTCAGCTGACAGATCTAAAGTTTCACATACAGGTAAAACATACAAATGACAAACCTCACTACTGCCCCTATTGTGATCACAGTTCTGCTGCACTCCGTAATATAAAGCGTCACATACGATCTAAACATACAAATGACAAACCTCACTCCTGCCCCCATTGTGATTATTGTTCTGTTCAGCTGAGTAATCTAAAGCGTCACATACTAACTAAACATACAAATGACAAACCTCACTCCTGCCCCCATTGTGATTATTGTTCTGTTCAGCTGACAGATCTAAAGTCTCACATACAAGCTAAACATTCAAATGCCAAATCTCACTACTGCCCCCATTGTGATTACAGCTCTGCAGTTCTCCGTAATCTAAAGCATCACATACTGTCTAAACATACAGTTGACAAACCTCACTCCTGCACTCTTTGTGATTATAGTACTGTTGAGCTGAGTAATCTAAAGCGTCATGTACTATCTGTACATACAAATGACAAACCCCACTCCTGCCCCCATTGTGATTACCGTACTGCTTATCAGACGCGTATAAAGTATCATATTCAGGTTAAACATACAAATGATAAACCTCACTCCTGCCCCTATTGTGATCACAGTTCTGCTGTACTCCGCAATCTAAAATTTCACATACTGTCTAAACATACAAATGACAAACCTCACTCCTGCCCCCATTGTGCCTATAATACTGTTCACTTGAGTTATCTCAAGCATCACATACTGTCTAAACATACAAATGACAAACCTCACTCCTGCCCCCATTGCGAATATAGTACTGTTCTACTGAAGAACCTGAAGCAGCACATACAGGTTAAACATACCAAAGACAAACCTCACTCCCGGCCCATTGTGATTAGAGTACTGCTCAGCTGA
- Protein Sequence
- MYTGIGYSLRHVKEEAPLEIAEDFVELKDEGKAVFICYYCQRDWNSFTGLKGCVRSCFDRTVNRPMKCSSASPTNNDRLFYNLEHHDLSRNTNVKPHSCALCNYSTVRLNNLKHHILSKHTNDKPHSCPHCDYSTAALRNLKRHILSKHTNDKPHSCPHCDFCTVQLTDLKFHIQVKHTNDKPHYCPYCDHSSAALRNIKRHIRSKHTNDKPHSCPHCDYCSVQLSNLKRHILTKHTNDKPHSCPHCDYCSVQLTDLKSHIQAKHSNAKSHYCPHCDYSSAVLRNLKHHILSKHTVDKPHSCTLCDYSTVELSNLKRHVLSVHTNDKPHSCPHCDYRTAYQTRIKYHIQVKHTNDKPHSCPYCDHSSAVLRNLKFHILSKHTNDKPHSCPHCAYNTVHLSYLKHHILSKHTNDKPHSCPHCEYSTVLLKNLKQHIQVKHTKDKPHSRPIVIRVLLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -