Rped018971.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000032:2636-4053[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.5 88 3.9 2.9 1 23 26 49 26 49 0.92 2 10 0.00099 0.058 14.0 0.1 2 23 56 78 56 78 0.97 3 10 0.017 1 10.1 2.8 1 23 84 107 84 107 0.95 4 10 0.0013 0.074 13.6 0.1 1 23 113 136 113 136 0.94 5 10 2.5e-05 0.0015 19.0 2.1 1 23 142 165 142 165 0.95 6 10 8.5e-05 0.0049 17.3 1.8 1 23 171 194 171 194 0.94 7 10 0.00014 0.008 16.7 2.4 1 23 229 252 229 252 0.94 8 10 0.045 2.6 8.8 2.7 3 23 260 281 258 281 0.94 9 10 0.43 25 5.7 5.9 1 23 287 310 287 310 0.93 10 10 0.00013 0.0077 16.7 0.6 1 23 316 339 316 339 0.94
Sequence Information
- Coding Sequence
- ATGTCCCGATCCACTGGAGTAAATACATCGATGAGCTATGAAAGTACAAGTCCTGCTGCTGTGCCAGAGAAACATTTTGCCTGTTGTGAATGCAATTACAGAACAAATTATAGGTACATCTTAAAGCAGCACGTACAGGCTAAACATTCACGTGAAAAACCTAGGTCCTGCCCCTACTGTGAATACAGTGCTGTTCAGGATGACAATCTAAATTATCACATACAGACTAAGCATTCAATTGACAAACCGTATTCATGCCACTATTGTAAATACAGCACTGTTTGGGCTGGCAGTTTAAAGCACCACATACAGGCTAAGCATTCAAATGATAGACCTCACTCCTGCCCCTACTGTGAATACAGTGCAGTTCAGGCTGGAACTCTAAAGATTCACATACTAGCTAAACATTCAATTGACAAACCATATTCATGCCACTATTGTAAATACAGCACTGTTTATAAAGCCAATTTAAAGAATCACATACAGGCTATACATTTAAATGAAAAACCTCACTCCTGTCCCTACTGTGAGTACAGTACTGCTCACCAGGGCAATCTAAGGCTTCACATACAGGGTAAACATTTAAAAGAGAAACCTCATTCCTGCCCCTACTGTGAATATAGAGCTATTCACACAAGCCATATTAAGTGTCACATACAGGCTAAGCATTCAAACGACAGACCTCACTCCTGCCCCCACTGTGAATACAGTGCTGTTCGGGCTGACCATCTAAGGCGTCACATACTGGCTAAACATTCAAACGATAAACCACACTTGTGCCCTCACTGTGAATACAGCACTGTCATGACTAGTCGTCTAAAGTATCACATACGGGCTACACATTTAAATGTGAAAACTTACTCCTGCCCCTACTGTGAATACTGTACTCTTATGTCTACCCATCTAAAGAATCACATACATGCTAAACATTTATTTGAGAAACCTCATTCTTGCCCCTACTGTGAATACAGTGCTGTTGAGAAGAGCAGTCTAAAGCGTCACATACAGGCTATGCACTCAGGAGACAAATCTACTTTATAG
- Protein Sequence
- MSRSTGVNTSMSYESTSPAAVPEKHFACCECNYRTNYRYILKQHVQAKHSREKPRSCPYCEYSAVQDDNLNYHIQTKHSIDKPYSCHYCKYSTVWAGSLKHHIQAKHSNDRPHSCPYCEYSAVQAGTLKIHILAKHSIDKPYSCHYCKYSTVYKANLKNHIQAIHLNEKPHSCPYCEYSTAHQGNLRLHIQGKHLKEKPHSCPYCEYRAIHTSHIKCHIQAKHSNDRPHSCPHCEYSAVRADHLRRHILAKHSNDKPHLCPHCEYSTVMTSRLKYHIRATHLNVKTYSCPYCEYCTLMSTHLKNHIHAKHLFEKPHSCPYCEYSAVEKSSLKRHIQAMHSGDKSTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -