Rped013835.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:147717848-147752655[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.27 16 6.3 5.4 1 23 1013 1036 1013 1036 0.97 2 17 0.099 5.7 7.7 2.2 1 23 1042 1065 1042 1065 0.96 3 17 0.074 4.3 8.1 4.6 1 23 1071 1094 1071 1094 0.96 4 17 0.0011 0.065 13.8 3.3 1 23 1100 1123 1100 1123 0.97 5 17 0.013 0.78 10.4 3.3 1 23 1129 1151 1129 1151 0.98 6 17 0.00013 0.0074 16.8 0.7 3 23 1159 1180 1158 1180 0.95 7 17 0.035 2.1 9.1 7.7 1 23 1186 1209 1186 1209 0.95 8 17 0.03 1.8 9.3 0.2 1 23 1215 1238 1215 1238 0.95 9 17 0.0047 0.27 11.9 0.1 1 23 1244 1267 1244 1267 0.93 10 17 0.041 2.4 8.9 8.8 1 23 1273 1296 1273 1296 0.97 11 17 0.0072 0.42 11.3 2.1 2 23 1303 1325 1302 1325 0.96 12 17 0.11 6.5 7.5 5.0 1 23 1331 1354 1331 1354 0.96 13 17 0.0014 0.082 13.5 0.9 2 23 1361 1383 1360 1383 0.94 14 17 0.54 31 5.4 2.9 1 23 1389 1412 1389 1412 0.95 15 17 0.0035 0.2 12.2 1.4 1 23 1418 1441 1418 1441 0.91 16 17 0.0056 0.33 11.6 0.4 1 23 1447 1470 1447 1470 0.92 17 17 0.069 4 8.2 11.4 1 23 1476 1499 1476 1499 0.98
Sequence Information
- Coding Sequence
- ATGTACACTACTGGAGATAGTATATGTATTAAGGAAGAACCTGATATGACAGAATTCAGCCCTTCTAATGGCAATGGAGGAAGTATACTGATCAAGGAAGAGCTCGACATTAAAACAGAGTTTGGCCCATTTAATGATTGTGATGGAGATAAAGCATTTATTAAGGGTGAAGAGGAAATAAAAAGAGAGGGATCAATAATTCAAGATTTTGATGAATGTATGACATTTAGTAATAATGAAGAGGAAATTAAAAGAGAGGAAATATTATTCGAAGTTTCAGATTTTGAAGAAAGTATGGTATCTATTAAGAATGAACGGGAAGTTGAAAGAGAGGAAACATTATCTGAAGTTTCAGATTGTGAAGAAAGTATGGAACCTATTAAAAATGAAGAGGAAGTTGAAAAAGGGGAAACATTATCTGGAGTTTCAGATTTTGATGAAAGTATGACATTAATTAAGAAGGAAGAGGAGGTTGAAGTAGGGGAAACATTAGCTGAAGTTTCAGATTGTGAAGAAAGTATGACACCTATTAAAAAGGAAGAGGAAGTTGAAAAAGGGAAAACAATATCTGAAGTTCCAGATTTTGATGAAAGTATGACATTAATTAAGAAGGAAGAGGAAGTTGAAAGAGAGGAAACATTATCTGAAGATTTTGATGAAAGTATGGCAACTATTGAAAGTGAAGAGGAAGTTGAGAGAGGGGAAACATTATCTGAAGTTTCAGATTTTGATGAAAGTATGGCATCTATTAAGAATGAAGAGGACATTGAAAGAGGTGAAACATTTTCTGAAGTTTCAGATTTTGATGAAAGTATGACATTAATTAAGAATGAAGAGGAAGTTGGAATAGGGGAAACAATAGCTGATGTTTCAGATTTTGAAGAAAGTATGGCACCTATTAAAATTGAAGAGGAAGTTGAAAGAGGGGAAACATTATCTGAAGTTTCAGATTTTGAAGAAAGAATGGCACCTATTAAAAATGAAGAGGAAGTTGAAAGAGTTGAAACATTATCTGAAGATTTTGAAGAAAGTATGGCACCTATTAAAAATGAAGAGGAAGTTGAAACAGGGGAAACATTATCTGTAGATTTTGAAGAAAGTGCAGCACCTATTAAAAATGAAGAGGAAGTTGAAAGAGGAGAAACATTATCTGAAGATTTCGATGAAAGTATGACATTAATTAAGAATGAAAAGGAAGTTGAAAGAGAGGAAACATTATCTGAAGTTTCAGATTTTGAAGAAAGTATGGCACCTATTAAAAATGAAGAGGAAGTTGAAAGAGGGGAAACATTATCTGAAGATTTTGAAGAAAGTATCCCATCTATTAAAAATGAAGAGGAAGTTGAAAGAGGGCAAACATTTTCTGAAGTTTCAGATTTTGAAGAAAGCATGGCATCTATTAAGAATGAAGAGGAAGTTGAAAGAGGGGAAACATTATCTGAAGTTTCAGGTTTGGATGAAATTAAGAATGAAGAAGAAATTAAAAGTGAGGACACAGAATCTGAGGACTTCTATGGATTTGTGATCGAAGAGGGATTTGTAACCAATGAGCACACTTCTGATGATGATGAAGAAAAGCCTTCTTATTTTGAGAAAATAAGGAAGATCCAAAACGAGTTGACTATTGCTAAGATTGCACATTTTGATCGAACTATGCCATTTATTAAGAATGAAGAGGAAATTAAAAGAGAGGAAACATTATCCGAAGTTTCAGATTTTGATGAAAGTATGACATGTATTAAGAATGACAAGGAAATTAAAAGAGAGGAAACATTATCCGAAGATTTTGAAGAAAGTATGGCACCTATTAAAAATGAAGAGGAAGTTGAAAGAGGGGTAGTATTATCTGAAGATTTTGAAGAAAGCATGGCACCTATTAAAAATGAAGAGGAAGTTGAAAGAGAGGAAACATTATCTGAAGTTTCAGGTTTGGATGAAATTAAGAATGAAGAAGAAATTAAAAGTGAGGACACAGAATCTGAGGACTTCCATGGATTTGTGATCGAAGAGGGATTTGGAAGCAATGAGCCCACTTCTGATGATGATGAAGAAAAGCCTTCTTATATTGAGAAAAAAAGGAAAATCCAAACCGAGTTGCCCATTGCTAAGAATGCACATTTTGATCGAACTATGCCATTTATTAAGAATGAAGAGGAAATTAAAAGAGAGGAAACATTATCCGATGTTTCAGATTTTGATGAAAGCATGACATGTATTAAGAATGACGACGAAATTAAAAGAGAGGAAACATTATCCGAAGATTTTGATGGAAATAAGGCATTTATTAATAGTGAAGAGGAAATTAGAAGAGAGGAATCAATAACCAGAGATTTTAATGAAAGCATGACATTTATTAAGAATGAAGAGGAAATTAAAAGAGAAAAATCATTAACCGAAGGTAATGGAGGAAGTATACTGATCAAGGAAGAGCTCGACATTAAAACAGAGTTTGGCCCATTTAATGATTGTGATGGAGATAAGGCATTTAATAGGAGTGAAGAGGAAATTAAAAGAGAGGAAGTATTATCTGAAGTTTCAGATTTTGAAGAAAGTATGGCACCTATTAAAAATGAAGAGGAAGTTGAAAGAGAGGAAACATTATCTGAAGTTTCAGGTTTGGATGAAATTAAGAATGAAAAGGAAATTAAAAGTGAGGACACAGAATCTGAGGACTTCTATGGATTTGTGATCGAAGAGGGATTTGGAAGCAATGAGCACACTTCTGATGATGATGAAGAAAAGTCTTCTTATATTGAGAAAAAGAGGAAAATCCAAACCGAGTTGCCCATTGCTAAGAGAGGAGTGAGTTTTGTTTGTTACCACTGTCAGAAGTGCTGGGACACATTCAGCTCTCTCAGGCTCTGTGTAAGGAAGTGCTATGCTCTGTCGCTCAAAAGGTCACATACTTCATATCAGAAAATATTGGCATCCAGTAAGGTCTCTGGAATCTCTAAACCATCTAAGTACCTCAAGAGTTCTAGAGAATTCAGTCATGAGAAGAAACCTTCATCTGTTGACATTGCAGCCAAAAAGCGTTACTCCTGCATGAAATGTAATCATACTACAAATTTGAGACATCTCCTAAAACAACATATAATAACTAAACACTCGAGTGACAAGCATTTTGCTTGCTCTTATTGTGAATTTACTACTCTACGTAATGACACTTTAAAACATCACATAATGATTAAGCACACCTTCGAGAAACCATACTCTTGTACACATTGCGAATATAGATCTGTATATTCTAGCCATATAAAACAACATATAAAAGCTAAACACAGTCAAGAGAAGGTACATAGGTGTCAGCATTGTGATTATAGTACTGGTTATGCTGGAAATTTGAAACAGCACATAAAGGTTAAGCACGCTCAAGATAAGCCTTATACCTGTACGCATTGTGATTTCCGTACTGCTAGCACGACTACTTTAAAGCAGCACACATTGGTGCACACTCAAGACAAGGCTAGTGCCTGTCCACATTGTGATTACACTGCTTCACGTTCGGACTATTTGAAACGGCACATAATGGCTAAACACACTCAACAGTGGCCTTATACATGCACGCATTGTGATTTTAGTTGTGCTCACGAGAACAGTTTAAAGCATCACATATTGGCTAAGCACAAATACGACAAGCCCTACACTTGCTCTCAGTGCAACTTTAGTACTGTTAGTCCTGTTGTGTTAAAAGAGCACATAATGGATAAGCACTCTCAGGAGAAGGCTTATACCTGTCCAGATTGTAATTATAGTACTGCTCTCGAAAGTGGTCTAAAGCAACACAAATTGGCTGCTCACAAAGGTGACAAGCGTTTCTCTTGCGACCATTGTCATTATTCCACTAATCATTCTTACCAATTAAAGATGCATACAATGTCTAAACATACAGGTGAGAAACCCCTCATTTGCCCTCAGTGTAAATACACTACTGTTTATCTGAGCTGTTTAAAGCTTCACATAAAGACTAAGCATGGAAATGACAAGCCATACATTTGCCATCACTGCAATTACAGTACTCCCCACTTCCCCAGATTAAAGGCGCACATACTGTCTAAACATGCGTTTCGCAGACCTCTCTCCTGCCCTCATTGCGATTTCAAAACCTCTTTCCCCGGTAATTTGACGCTGCACATAAAGGGTCGGCACGAACGCAAAAAACCTTTTTCTTGCCCTCATTGCGATTATAATGCTCTTCATGCAGGGCATTTAAAGCAGCACGTAATATCAAGGCACACTAACGAGAAGCCGCATGCTTGCCCCCAGTGTGAGTACAGGTCTGCAAATGCCTCCCACTTAAAGAATCACATAACCGCTAAGCATACACTTGAGAAGCGCCATGCTTGTCCCTCGTGTGATTATAAAACTTCTCGCCCCACTGGTTTAAAGTCACACATAATAGCTAAGCATACAAATGAAAAGCCATTTAAGTGTAAACATTGTCAGTATGGTAGTGTCAAGCATTCGCATCTAAAGCATCACATCAAAACTAAGCATCCTGATATTTAA
- Protein Sequence
- MYTTGDSICIKEEPDMTEFSPSNGNGGSILIKEELDIKTEFGPFNDCDGDKAFIKGEEEIKREGSIIQDFDECMTFSNNEEEIKREEILFEVSDFEESMVSIKNEREVEREETLSEVSDCEESMEPIKNEEEVEKGETLSGVSDFDESMTLIKKEEEVEVGETLAEVSDCEESMTPIKKEEEVEKGKTISEVPDFDESMTLIKKEEEVEREETLSEDFDESMATIESEEEVERGETLSEVSDFDESMASIKNEEDIERGETFSEVSDFDESMTLIKNEEEVGIGETIADVSDFEESMAPIKIEEEVERGETLSEVSDFEERMAPIKNEEEVERVETLSEDFEESMAPIKNEEEVETGETLSVDFEESAAPIKNEEEVERGETLSEDFDESMTLIKNEKEVEREETLSEVSDFEESMAPIKNEEEVERGETLSEDFEESIPSIKNEEEVERGQTFSEVSDFEESMASIKNEEEVERGETLSEVSGLDEIKNEEEIKSEDTESEDFYGFVIEEGFVTNEHTSDDDEEKPSYFEKIRKIQNELTIAKIAHFDRTMPFIKNEEEIKREETLSEVSDFDESMTCIKNDKEIKREETLSEDFEESMAPIKNEEEVERGVVLSEDFEESMAPIKNEEEVEREETLSEVSGLDEIKNEEEIKSEDTESEDFHGFVIEEGFGSNEPTSDDDEEKPSYIEKKRKIQTELPIAKNAHFDRTMPFIKNEEEIKREETLSDVSDFDESMTCIKNDDEIKREETLSEDFDGNKAFINSEEEIRREESITRDFNESMTFIKNEEEIKREKSLTEGNGGSILIKEELDIKTEFGPFNDCDGDKAFNRSEEEIKREEVLSEVSDFEESMAPIKNEEEVEREETLSEVSGLDEIKNEKEIKSEDTESEDFYGFVIEEGFGSNEHTSDDDEEKSSYIEKKRKIQTELPIAKRGVSFVCYHCQKCWDTFSSLRLCVRKCYALSLKRSHTSYQKILASSKVSGISKPSKYLKSSREFSHEKKPSSVDIAAKKRYSCMKCNHTTNLRHLLKQHIITKHSSDKHFACSYCEFTTLRNDTLKHHIMIKHTFEKPYSCTHCEYRSVYSSHIKQHIKAKHSQEKVHRCQHCDYSTGYAGNLKQHIKVKHAQDKPYTCTHCDFRTASTTTLKQHTLVHTQDKASACPHCDYTASRSDYLKRHIMAKHTQQWPYTCTHCDFSCAHENSLKHHILAKHKYDKPYTCSQCNFSTVSPVVLKEHIMDKHSQEKAYTCPDCNYSTALESGLKQHKLAAHKGDKRFSCDHCHYSTNHSYQLKMHTMSKHTGEKPLICPQCKYTTVYLSCLKLHIKTKHGNDKPYICHHCNYSTPHFPRLKAHILSKHAFRRPLSCPHCDFKTSFPGNLTLHIKGRHERKKPFSCPHCDYNALHAGHLKQHVISRHTNEKPHACPQCEYRSANASHLKNHITAKHTLEKRHACPSCDYKTSRPTGLKSHIIAKHTNEKPFKCKHCQYGSVKHSHLKHHIKTKHPDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -