Rped006840.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000003:121250819-121254132[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.2 12 6.7 0.1 2 23 118 139 117 139 0.91 2 17 0.048 2.8 8.7 0.7 2 23 146 168 145 168 0.94 3 17 0.0031 0.18 12.4 0.3 2 23 175 197 174 197 0.94 4 17 0.0014 0.081 13.5 1.1 1 23 203 226 203 226 0.96 5 17 5.9 3.4e+02 2.1 0.4 3 23 234 255 233 255 0.82 6 17 0.053 3.1 8.5 0.4 1 23 261 284 261 284 0.94 7 17 0.39 22 5.8 0.6 1 23 290 313 290 313 0.85 8 17 0.0059 0.34 11.5 4.0 3 23 321 342 319 342 0.95 9 17 0.03 1.7 9.3 1.1 1 23 348 370 348 371 0.94 10 17 0.00041 0.024 15.2 2.8 1 23 377 400 377 400 0.96 11 17 0.0053 0.31 11.7 6.2 1 23 435 458 435 458 0.94 12 17 0.00036 0.021 15.4 1.8 1 23 464 486 464 487 0.95 13 17 0.00022 0.013 16.0 0.3 1 23 493 516 493 516 0.98 14 17 0.56 33 5.3 0.3 1 23 522 545 522 545 0.92 15 17 0.0013 0.076 13.6 4.2 1 23 551 574 551 574 0.95 16 17 0.037 2.2 9.0 7.5 1 23 580 603 580 603 0.98 17 17 0.17 9.6 7.0 0.5 1 23 609 632 609 632 0.94
Sequence Information
- Coding Sequence
- ATGGACAAAGTTGTTGTTAAACTAGAGCCCGAAGATCATAGTTTACCAGATAATAACTGCAAATTAATTAGTGGCATCAAAAAAGAAATAAAAGTAAAGGAAGAATTACTTGAAACCCCTAGTTTTGAAGAGTATGCAGCGAAATCTTCCGATCTGTCATTTAATCCGAAAGATTTGGATGCAAAGTCTAAGAAAACGTGTTCGATTAAAAAAGTATATTATTGCTGCCATTGCAGATTTTCCACATTCAAACGAGCCAAGATTAAAAGTCATATTAAATCTGAGCACATGAAGAAAATACTTCGGGCTTGTGCTAGAAAGAAGAAAAATAAAATAGAAATAAGCTGCCAATCGTGTCCGTATTGTGACTACAAATCCACAAGTCGGCTTGTAGCTGTGCACATCCTCACCATCCACAAGGGGAAGATCCCGTCGACTTGTCAGCATTGTGGCTTTGTGTCTGACGGCTATCAAGCTCTTAAGAAGCATCTGCTCCAAGTCCATGCAGAACTACAAACAATTTCGTGTCCGTATTGTGAATTCAGTGCTAGTACTCGCCGGAACGTTACTAGACATATACTCTGGAAGCACAAAGAGAAAAACCCCCACCCCTGCCCTTATTGTAGTTATAGCTCGACAGTCTTTCAGTACCTCAGGAAGCACATGATCGTCGATCATCCGGATAAACAGCCTGCTCCTTGTCCTTATTGTAAGTTCAACGCACTCGGAAGCGAAAAACTCACTGCACACATCTTAAGCGAGCATAAAGGTGAAAAGGCCTTTATTTGTCCATATTGTAGTTATAGCGCAGATAGATCCCAAATCCTCCAGAAACATTTAAAGGCGAAACATGCGGATATTGAACCTTTCAATTGTCCTTATTGTGATTATTGTTCAATTGCCCAGAGAAAAGTTGTACTTCACGTCCTCAGTGAGCACAAAGGGAAAAATCCGCATCTCTGTAAATATTGTGACTATAACTCGAAGAGCCCACAGCTTCTCAAAACTCACACGAAAACGAAGCATGCAGATAAAGAGCCTTTTGCCTGTCCTTACTGTGATCGCAGAGAAAGTGGGCGTCGGAAACTTACAGCTCACGTGCTTAAACATCACCAAGGTTTGAGCCCCCACGTCTGTCCGCACTGCAACTACAGCACAGAAAGTTCTCAGGGGCTAAAAAAGCACATAAGCTCCAACCACAAAGACAAGAAACGCTTCCCTTGTCCCTACTGCCAGCATGTCGAGCTAACGAGCCGTAAGTTGACTTTTCATATTTTAAGCAGCCATAAGGGAAAAAATCCCCACTGTTGTCCATATTGTGACCATAGTACAAACAAATCTACAAACCTTTCTAAGCACATCATGGCCAAGCACTCTGGGGAGAAACCATTTGCTTGCCCACACTGCAACTACAAGACAGTTCAAGAACCCAGTCTTAAGAGCCACATTAATGTTCATCACTCAAACTCCAAGCCATACCCATGCCCGAAATGTGATTACGAGGCTAACTATATGACTAACTTAAAGAACCATATACGCAAAGTGCACTTTAAGCAGCAGCCATACGCTTGCCCATTCTGCAACTACAATGCCCTTCGCCGTGACTATTTGAGATCCCATGTAATGGCGAAACATACCAAAGAGAAGCGTTACTCTTGCAAGCACTGCGATTTCCGCTCTGTCCAGCCCGGACATCTCCGGAAGCATGTGAAAGACAAACACGAGCAGCGAAAATCTTTCCAGTGCCAGCACTGCAGTTTCACTTCGAACCATTCCACGAATTTCAAAAATCACGTACTTACAAAGCATACGAACGTTCGGCCATTTGCTTGTCATCTTTGTGATTACACGGCAGTTGCATCGTATCTTTTAAAGGGCCACCTTGATCGAAAACATAAAAATAGTGGAAATAAGGAATGA
- Protein Sequence
- MDKVVVKLEPEDHSLPDNNCKLISGIKKEIKVKEELLETPSFEEYAAKSSDLSFNPKDLDAKSKKTCSIKKVYYCCHCRFSTFKRAKIKSHIKSEHMKKILRACARKKKNKIEISCQSCPYCDYKSTSRLVAVHILTIHKGKIPSTCQHCGFVSDGYQALKKHLLQVHAELQTISCPYCEFSASTRRNVTRHILWKHKEKNPHPCPYCSYSSTVFQYLRKHMIVDHPDKQPAPCPYCKFNALGSEKLTAHILSEHKGEKAFICPYCSYSADRSQILQKHLKAKHADIEPFNCPYCDYCSIAQRKVVLHVLSEHKGKNPHLCKYCDYNSKSPQLLKTHTKTKHADKEPFACPYCDRRESGRRKLTAHVLKHHQGLSPHVCPHCNYSTESSQGLKKHISSNHKDKKRFPCPYCQHVELTSRKLTFHILSSHKGKNPHCCPYCDHSTNKSTNLSKHIMAKHSGEKPFACPHCNYKTVQEPSLKSHINVHHSNSKPYPCPKCDYEANYMTNLKNHIRKVHFKQQPYACPFCNYNALRRDYLRSHVMAKHTKEKRYSCKHCDFRSVQPGHLRKHVKDKHEQRKSFQCQHCSFTSNHSTNFKNHVLTKHTNVRPFACHLCDYTAVASYLLKGHLDRKHKNSGNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -