Rped013742.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:145739285-145763673[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.1 6 7.6 1.1 1 23 149 172 149 172 0.96 2 13 2.9 1.7e+02 3.1 1.6 3 23 202 223 200 223 0.89 3 13 0.00035 0.02 15.4 1.6 2 23 230 252 229 252 0.96 4 13 0.18 10 6.9 3.1 1 23 258 281 258 281 0.92 5 13 0.00012 0.0068 16.9 3.7 1 23 287 309 287 310 0.95 6 13 0.0032 0.19 12.4 0.9 1 23 316 339 316 339 0.96 7 13 0.0094 0.55 10.9 0.5 1 23 345 368 345 368 0.96 8 13 0.00075 0.043 14.4 0.1 1 23 374 397 374 397 0.97 9 13 0.027 1.6 9.5 0.2 2 23 404 426 403 426 0.88 10 13 0.00053 0.031 14.8 0.8 2 23 433 455 432 455 0.94 11 13 0.001 0.06 13.9 0.4 2 23 462 484 461 484 0.92 12 13 0.0013 0.075 13.6 2.7 3 23 492 513 490 513 0.95 13 13 0.15 8.6 7.1 3.7 1 23 519 542 519 542 0.93
Sequence Information
- Coding Sequence
- ATGTCGAAGAAAGAGTTCTGGGCATGTAAAATGAGCCTTACTAACAACTATGGGGGAATTGGAGAGATCCGAATCAAGATGGAAGATGATTATGTCGAAGAAATCCCACAAGACTTATATGGCACAGATGACATTGAAGAAAGTTCAGAATCAGAGGTGGAAGAAAGATTTATCAAAAAAGAAGTTGCTGATTGTGAAGCCATTGGAGAAAGTTTAGGAGGGGCCGTGGAAGAGATTTTTATCAAAACTGAAGATACAAGCTGGGCCGGAATTGAAGAAATGCCCTGTGCGGCTGAAGGGGACTTCGAAGAGCCACGGTTGGGGATGATTGCATTACCGCCATCTGCAAGTATTTGCGGAACCTCAGTCAACTCGAGTGGCGCTGTAGGAGGACCAAATCAGTCAGAAAGTAGCTTAAATGAATACGTATCTGTCAAGAAGAACTTCTTCTGTATGAAGTGCAGCTACATCACCAATTCTAGTTACGCTATAAAAATGCACATTATGACGACACATGGAAATGATGAACCTTCCTATAGTTCTCATTCATATTCTCATCAGCCCAGTATTTTAAATCAGCAGAACATTGCAAAACCTCTCATTTGCCCATGCTGCGATTACACTACCGCCGACACTAAAAATATGAAGGAACACGTTGCTCATAATCATGGAATCAACTCGCCTAAACCTTGTCCACATTGTGATTATATTACTACAAAATCAATGAATTTAAAGTATCACATACTGACTAAACATATAAACGACAGACCCCATATTTGCCCACACTGTAATTACAAATCTTTGCGATCTACCACTTTAAAACTGCACATAATGGCTAAGCATATGAATTACAAACCTCATGTCTGTCCTCATTGTAATTATAGTTCTGTTGTATTGAGTAACCTAAATCTGCATATAAAGACCCACCACTCGACTGACAGGCCGTTCAGTTGCCCCCATTGTGACTATAGTGCTGTTCGGGGAGACAGATTAAAGATACACATAAAGAACAAGCATACGGCCAATAAGAGATTTTCTTGCTCTGAATGCGATTATGCTTCCGTGTCGCCCCGAAGGTTAAAGTATCACGTAATGTCCAAACATACAAACGAAAAACCCTTCTCTTGCCCTAACTGTGATTTCAAAACTGTCCAACCTTGGGGTTTGAAGTTGCACATAAATGTTGTACATAAAAATGAGAAACCTCTAATTTGCCCCTATTGTGATTATAGAACTGTCTCGAAGAAAACATTGGGGGATCACGTAACTGCCAAGCACACCAACGACAGACCCCTAACTTGCTCTTTTTGTGACTATACCACGGTATACGCGAGCACTTTGAAACGCCATTTGCAAGCGAAACACAGCAATGGCAAGCCTCTCACTTGTGCTTATTGTGACTATACGACGGTATATGCCAGCAGTTTGAAATATCATATGACAGCGAAGCACAGCGATCGGAAGCTCCTAGCTTGTTCTTATTGCGATTGGAAAACAATTCATTACGGCCATTTAAAAAGGCACACCATGGTTAAACATTCTAAATTCAGATCATATTCTTGCTCTCTGTGTAATTTCCGTACTACTAAAAGATTATGTCTAAAGAAGCACATAACCGCTGAACATACTTTACCCAAATCTCGTTCTAACTACTAG
- Protein Sequence
- MSKKEFWACKMSLTNNYGGIGEIRIKMEDDYVEEIPQDLYGTDDIEESSESEVEERFIKKEVADCEAIGESLGGAVEEIFIKTEDTSWAGIEEMPCAAEGDFEEPRLGMIALPPSASICGTSVNSSGAVGGPNQSESSLNEYVSVKKNFFCMKCSYITNSSYAIKMHIMTTHGNDEPSYSSHSYSHQPSILNQQNIAKPLICPCCDYTTADTKNMKEHVAHNHGINSPKPCPHCDYITTKSMNLKYHILTKHINDRPHICPHCNYKSLRSTTLKLHIMAKHMNYKPHVCPHCNYSSVVLSNLNLHIKTHHSTDRPFSCPHCDYSAVRGDRLKIHIKNKHTANKRFSCSECDYASVSPRRLKYHVMSKHTNEKPFSCPNCDFKTVQPWGLKLHINVVHKNEKPLICPYCDYRTVSKKTLGDHVTAKHTNDRPLTCSFCDYTTVYASTLKRHLQAKHSNGKPLTCAYCDYTTVYASSLKYHMTAKHSDRKLLACSYCDWKTIHYGHLKRHTMVKHSKFRSYSCSLCNFRTTKRLCLKKHITAEHTLPKSRSNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -