Rped016623.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000006:148365465-148376564[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6 93 3.9 6.2 1 23 136 159 136 159 0.96 2 12 0.066 3.8 8.2 4.8 1 23 181 204 181 204 0.92 3 12 0.00041 0.024 15.2 0.4 1 23 210 233 210 233 0.97 4 12 7e-05 0.0041 17.6 3.2 1 23 239 262 239 262 0.97 5 12 0.002 0.11 13.0 0.0 1 23 268 291 268 291 0.94 6 12 0.0068 0.39 11.3 6.2 1 23 297 319 297 320 0.95 7 12 0.0069 0.4 11.3 0.5 1 23 326 349 326 349 0.95 8 12 0.00073 0.042 14.4 7.2 1 23 439 462 439 462 0.97 9 12 0.0035 0.21 12.2 0.4 1 23 468 491 468 491 0.97 10 12 0.063 3.6 8.3 1.9 1 23 500 523 500 523 0.95 11 12 0.0012 0.068 13.7 0.8 1 23 529 552 529 552 0.96 12 12 0.0011 0.066 13.8 2.2 1 23 558 581 558 581 0.96
Sequence Information
- Coding Sequence
- ATGGAAGGCAATGAAGAAATGCCTGCTAAAACTAACATTGCTCCTAATGCTGTCTGGATTAAGAAGGAACCTGAAGACTTAAAGCCAACTGTAACAAATGAAAATGTGGACGAGTATTATTCAAGATTTGAACCTGGCGATGGTTGGATCAAGACTGAACCAGTTGGTCCTGATGAGCAACTTTATTTCGAACATGGTAATAATAATTTTGGGGAAACTGCAGGGGACTGTAAAATATTTAGTGAGCCATGTTCCTCAGGACCAAAAAATTGGGATGTAGAAACTAATGAAGATCCAGATGTATTCTTGCCTTTAGAAATATCTTGTATTGAAGGGGAAAGTGGAGAAGAATTCTTCCAAAAGGTCACACGAAATTGGTCAAAATCTGGTTCAGGCTTGAAGCCATTCACTTGTTACCATTGCAAGAATAAGAAGAGTACATTGAAGTCACTAAAATCACACATCAAAAGAAGTCATATAGATCTGAATGGGCTGATAGAAATGAAAGTAGACGTGGAGCGAGGAGAGGGAGGGAAAAGGCATAAGTGCCCTTTCTGCCATTACCGGACTGCATATCATTTCAACTTGCGATCTCATGTGATTGGCGTCCATACTAATGAGAGGCCTTACAAATGCGCTCATTGTGATTATGAGACTGCATACGCGCGTGCATTGAGGACACACATTCGAGGAGTGCACGCCAAGGACAAGCCCTACCGGTGCAGCGAATGCAGGTACTCCACGGCGCATTCTGGCCACTTAAAGTCGCACATGCGCGGTGTGCACAGTGATGAGAGGCCGTTCCAGTGCGATTGGTGCGGGTACAGGAGCGCTTACCCACGCGCATTGCGCGTACACGTCATGGCATTGCATAGCAACCAGAAGCCGTTCAAGTGCACCCAATGCGATTACAGTGCGTGCCATTCGAGCGACTTGAAGCTGCACGCAATGAACCACCATACGCTGGACGTGCCTCATCGCTGCCCCTACTGCCCTTACACATCTGCACAGATCGCCCACATCACCACTCACATCATGGCTATACATCAACCCTTCAAATCGCCTCATTCCCACGTAGTCAATAACTCTAACGATATTCAGAATAAGTCGACAAATATAACACCAAAGGATATCCAAATCGAAAACAAATCACAACTCGACAACGCCCAATTGATTGATAGCAACGAAGCCAATGAGCAACCAATGTTGGAGTCAGAAGTGGAATATGCGACATTCGAATGCGATCCTTTCGCTCTGCTGTCGTGCCAAGGAGGAGGGGAAGAGCTAGATGACCCCTTGCCTAGCAAGAAGCAGTACCAATGCAGGCACTGCGATTACAGCTTCGAGAAATTCAAGCATTTGAAATACCACATGAAGGAGGAGCATCCGGAGATGAAGTGTTTCGAGTGTAACCAGTGCGAGTTCAGTGCGCCCAACTCCAGCCTCCTCAAGTACCATACGATGAGGGTTCACAAAGCTGCGAAAGGAGCTACAGTACACGCGTGTGCTAAATGCGCGTATTGCAGTGGAAGCAAGGACAAGCTGCAGGCGCACGTTCGAGTCAAACACACGCGTGTCCGTCCCTTCAAATGCCCTCAGTGTGAGTACAGCTCGACGCAGGCAGGCCACATCAAGATCCACGTCCGAGCTAAACATACCAATGAGAAACCCTACAACTGCTGCTACTGTGGATATCAGACGGCTTACTCGAGTGCTTTGAAATCTCACATCATCAAAAGGCACACCAACGACTGA
- Protein Sequence
- MEGNEEMPAKTNIAPNAVWIKKEPEDLKPTVTNENVDEYYSRFEPGDGWIKTEPVGPDEQLYFEHGNNNFGETAGDCKIFSEPCSSGPKNWDVETNEDPDVFLPLEISCIEGESGEEFFQKVTRNWSKSGSGLKPFTCYHCKNKKSTLKSLKSHIKRSHIDLNGLIEMKVDVERGEGGKRHKCPFCHYRTAYHFNLRSHVIGVHTNERPYKCAHCDYETAYARALRTHIRGVHAKDKPYRCSECRYSTAHSGHLKSHMRGVHSDERPFQCDWCGYRSAYPRALRVHVMALHSNQKPFKCTQCDYSACHSSDLKLHAMNHHTLDVPHRCPYCPYTSAQIAHITTHIMAIHQPFKSPHSHVVNNSNDIQNKSTNITPKDIQIENKSQLDNAQLIDSNEANEQPMLESEVEYATFECDPFALLSCQGGGEELDDPLPSKKQYQCRHCDYSFEKFKHLKYHMKEEHPEMKCFECNQCEFSAPNSSLLKYHTMRVHKAAKGATVHACAKCAYCSGSKDKLQAHVRVKHTRVRPFKCPQCEYSSTQAGHIKIHVRAKHTNEKPYNCCYCGYQTAYSSALKSHIIKRHTND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -