Rped005266.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- ZNF335
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000003:26268908-26307465[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.064 3.7 8.3 1.8 3 23 128 148 127 148 0.97 2 17 4.3e-06 0.00025 21.4 4.7 1 23 154 176 154 176 0.98 3 17 0.032 1.8 9.2 4.5 1 23 183 205 183 205 0.97 4 17 0.00089 0.051 14.1 0.6 3 23 214 234 213 234 0.97 5 17 0.00056 0.033 14.7 4.2 1 23 240 262 240 262 0.98 6 17 0.012 0.68 10.6 1.6 3 23 276 297 273 297 0.91 7 17 1.6e-05 0.00095 19.6 3.7 1 23 303 325 303 325 0.98 8 17 0.027 1.6 9.4 1.7 1 23 331 353 331 353 0.97 9 17 0.14 7.9 7.3 0.1 2 23 361 382 360 382 0.95 10 17 0.21 12 6.7 8.4 1 23 388 410 388 410 0.96 11 17 5.8e-05 0.0033 17.9 4.7 1 23 416 439 416 439 0.96 12 17 0.052 3 8.6 0.0 3 23 722 742 720 742 0.95 13 17 0.012 0.71 10.5 0.6 1 23 784 806 784 806 0.96 14 17 0.0032 0.18 12.4 3.0 2 23 812 833 811 833 0.97 15 17 0.038 2.2 9.0 6.9 1 23 839 861 839 861 0.98 16 17 0.06 3.5 8.4 2.8 1 23 872 894 872 894 0.97 17 17 5.1 3e+02 2.3 1.3 1 23 902 924 902 924 0.91
Sequence Information
- Coding Sequence
- ATGAGTGAAGAAGACGTTCTCGTAGAAGTTGTGATCAATGGAAGGGATGTTCTTCAATTTTATTCGACGCATGAACATTACAAAACTCTTTATGAAGATAGAGAAGCTTTAGTATCAACTGTGAAGAATGCATTCAAAGACGGGTTGCTGTCTACTGAAGATATTAAAGATGTAGACGATATACAGACAGTCAACTTCTTATCCGAAGTTGCCAGTGATGGTGTTGAAATCGCTACTGGGGAGGAAGGTGGTGAGGAACAAGAATATGAAGAGTATGAAATCATCGAGGAAACTGAAATTGACAATATTACGAGTTCTGCACTACCGGAAGAGCTAATCATTGACGTTGGTTTAAGTTCTGCAGACGAAAGACTGAATCTCTGTGCATTTTGCGATTATAGAACATACAATGTTGGACATTTTAAAATTCATATGAGGCAACATACTGGAGAATCTCCGTTCCAATGTAATTTTTGTGATTATAAGTCCAAACAGAAATCTAATCTTAAAAGACATATGAGGCAACATCTTGAAGGAAAGGACCACTTTGAATGTAAAACGTGTAATTTTACTTGCACTCAAGAAAAAGTTTATAAACGCCACATGATTCTTCACTCTCGATCTAGACCCCTAAGACCATGCCCATTCTGTGATTATTTTTCTACTAGCCTTGCACATCTCACAGTCCATATTCGTCAACATACTGGGGAAACTCCATATCATTGTGGGTTGTGTTCTTATAAGACTGTTCAGAAATCAAATCTTACAAGGCACTTGAAAAAGCATAGAAGAGGCCGGATAAGTAAGGCTGATAAACTCCGTTGCTGCTTGCATTGCCCATATCGTACACCTAATCCTGCTCATTTAATGGCCCATGTACGTGCAGCACACACAGGCGAAACCCCATATGCTTGTTCACATTGCGACTATAAATCAGCTCAAAGGTCAAATTTGAAGAGGCATCTGCGCAAACATACAGGTGAACGCCCATATCACTGTACTCTGTGCAGTTATACTACAGCCTATCCATATGTGTTGAAAAAACACATTGAAAATCATCCGAATATAGATGAAAAAATCAGTTGTGAGATATGTAATTATGTTGCACTTTCACCTGTTGAATACAAACGCCATATGAAACTTCATGCTGGAAAAACTATACATTGTTGTCATATTTGTGGTTACATATCACTAAATTCTGATCACCTAAAGACTCACTTGCGAAGACATTCTTTGGAGAGGCCTTACAAGTGCCACTATTGTAACTATGATTCTTCACAAAAATCAAACCTGAAACGTCATTTGTTGCTAAAGCATCTTGGTCAGCAGAAAGATGATAATAAGAACTCAAATTCAGAAGAGGGTGTTTTGGAAAATAAAAAAACTGAGATTTTGAACATTGATTCGAGTAATAGTGGAACTTTACCCGAAGAAAGAATTGATCAGGACAATAATGAAGCCCTTCTTGAGTGTGAGGATGAAACTGAAAACCATGAGTCTACTAGTAACTCAGGTGCACACCAATCTCATGAAGAGAATGACAATGAGAGTGAATCAGTTGAAGTGGTTAGTGAAGAACAGGTTATTACTACTGCAATGGAAGAAGGGGAATATGATGTGCTAGAAGAAGAATATGTTGACGGAACTTTGATTAATGGTGCTACGGTAGAATGTACTACTGGAGAAGTAATTGTGGAACGTTCTCGGAAGTCAAAAAATTTGAGTTTTCTTAATAAGTCGCAAGCTGAAAAGCTAAAAGAATTCAAACGACTTTTACAGCAGGGTACACAATTCGCACAGAATGGTCCAACATCTACCAGTTTTCAAGAAGAGGCCTCAAGACAAACCATGAGTGCTGACTATGACAACATATCGGAGAATACCGAGTCCTGTACTGAAGATCCTTCTCTGGAAGAAGATTTTCAGGAGTCATCAGTTCATCAAGTGAGTGAAGGAAATTACAAACATTCGGCACCTCTAAAAGAAAAAATGAAGCCTCATACTGTTACATTTTCGTCAGGGCACATTAAGCAACAAGTTGGTGACTTAATGTCAGAAGGTTCATCTATATTAATAGTTGAAGAAGAAGACACAAATCATTTAAGAGAAACTGAGAGTGAAATTGGATCTGAAGAAGTAGATAATGGAAGTGGTTTTCAAATTTGTGAGCTTTGTGGTTATGAAGCTGTCTCATTAGATGAATTAAAGGCTCATATTGGAATACACACGGGAGAAACTATTGCTACAGTATACCACTGTGATATATGCAGTTTTAAATCAATGAGAGAAGCTGACATTGGCAGGCATAAAAATCTATTTCATGGGGCTAGTCCTCCACGTAGACTTACATTTGTTTGTAAAGAGTGTGGCTTCAGGACTGGTAGCAAAGAAGAACTCATTGAACATGGCCATAGCCACAAGGTTCAGTCATTAAAATGCAAGATTTGTGAGCAGAAATGTAGTAATCTGGAAGAACTCAAGATACACAATAGGAAACATATTGGTGAGGAACCTTTCGAATGCTACTACTGTGCTTATCTTACTGCAAGGAAGTGTCATTTGAGAAAACACATGAGAAGGCACGCCATAGGAACCGGGGGCAAAGGACCCCCTTATCAATGCTACACGTGTGGTTATCGAACAGATATCAGAGAGAACTTCCACAGGCATATAGGAAAGCATAAAATTGAACAAACAAAACCGCACACCTGTCCTGATTGCCGGTTTGTTACATTAAATGAAAAAGTTTTTATCAGTCACCTTAAAATGCACTCTGGAAGTGCTGTAGATGATAAAAATGTGTCTTCAGAAACCAGCAGGAAATTAAAGGAAAAATCTCAAGTACCTGGATTGAAGACTCATATTGAAATAAAAAAGGAAAGAGTCCCCTTAAAAGAATGGATTGTTAATGCTTCTGAACCTGATGAGCCTATGGGTATAACTCGTATCAAAAATGAGTTTTTTGGCTTAGGAGAGAAAAAGAAAATGAATACAAAAGAAGATTATTATTTCTCCCCTGCAAAAAGAAGAAGAAAAGGTTTAAAGTCAATCAAAAATGCTGGTCCATCATCAGTTGTTGAGACACGTTTATCCAAAAAGTTCAATTTCAATATACATAACCTCTGCTCATCTAATGAAGCTAATCATAGTGGGTTTGATGTAGAGTTTACTGGTGAAGTTTTGAAATCTCATGGCAGTTTAAGAAAGTATACCAAATATGGAGAAATCCTTACTAAATCTGAAAATGAATTTGGAACTGTTTTGTCAAATATCGATAATGAAAAGCAGTTGCGAATAGCTTATGAAAAAATAAAACAAAGCATGATCTCTTTAAAAAATACTGATAAGGATAAAATGCTATCAATGCAGTTTACCATATATTTTAAAGATATCGATGAGAATCCTACAGATTTGATTGACGATTCATTGTCTGATATTGATTTGTCTCTTTCATCGGGCAATGATAGCGATTTAGACAATTTGATTGGCTTAGATAGTGACCTGGATTTGGACATGAATCCAACACAGGATCAAGATGTTTCGTCTTCAACAGAAAACAAATCTGATTTGCATAAATGTCTTAATTTGGAAAAGAGTAGAAAAAATGGTTCAAATAAAGCTGAGTCTGAGTTCATTTTTAATTTAGATGCGGCTGACAAAGTAAAATTCCTTCAAGAGAAGATCAGACAGAGAAACGAACGAATGAAAGAATTAAGACGATTGAAAATATTAAATGTCTCAGCTAGAAATGTAAAAAAAGAAGGAGTGAATGGTTTTAGGTCATTTAATGAGCCCCTTATTAATCATGCATTACCAGTGCCCATGGTTGGTTTGGAAGAGAGTCACTCAAATTCTTAA
- Protein Sequence
- MSEEDVLVEVVINGRDVLQFYSTHEHYKTLYEDREALVSTVKNAFKDGLLSTEDIKDVDDIQTVNFLSEVASDGVEIATGEEGGEEQEYEEYEIIEETEIDNITSSALPEELIIDVGLSSADERLNLCAFCDYRTYNVGHFKIHMRQHTGESPFQCNFCDYKSKQKSNLKRHMRQHLEGKDHFECKTCNFTCTQEKVYKRHMILHSRSRPLRPCPFCDYFSTSLAHLTVHIRQHTGETPYHCGLCSYKTVQKSNLTRHLKKHRRGRISKADKLRCCLHCPYRTPNPAHLMAHVRAAHTGETPYACSHCDYKSAQRSNLKRHLRKHTGERPYHCTLCSYTTAYPYVLKKHIENHPNIDEKISCEICNYVALSPVEYKRHMKLHAGKTIHCCHICGYISLNSDHLKTHLRRHSLERPYKCHYCNYDSSQKSNLKRHLLLKHLGQQKDDNKNSNSEEGVLENKKTEILNIDSSNSGTLPEERIDQDNNEALLECEDETENHESTSNSGAHQSHEENDNESESVEVVSEEQVITTAMEEGEYDVLEEEYVDGTLINGATVECTTGEVIVERSRKSKNLSFLNKSQAEKLKEFKRLLQQGTQFAQNGPTSTSFQEEASRQTMSADYDNISENTESCTEDPSLEEDFQESSVHQVSEGNYKHSAPLKEKMKPHTVTFSSGHIKQQVGDLMSEGSSILIVEEEDTNHLRETESEIGSEEVDNGSGFQICELCGYEAVSLDELKAHIGIHTGETIATVYHCDICSFKSMREADIGRHKNLFHGASPPRRLTFVCKECGFRTGSKEELIEHGHSHKVQSLKCKICEQKCSNLEELKIHNRKHIGEEPFECYYCAYLTARKCHLRKHMRRHAIGTGGKGPPYQCYTCGYRTDIRENFHRHIGKHKIEQTKPHTCPDCRFVTLNEKVFISHLKMHSGSAVDDKNVSSETSRKLKEKSQVPGLKTHIEIKKERVPLKEWIVNASEPDEPMGITRIKNEFFGLGEKKKMNTKEDYYFSPAKRRRKGLKSIKNAGPSSVVETRLSKKFNFNIHNLCSSNEANHSGFDVEFTGEVLKSHGSLRKYTKYGEILTKSENEFGTVLSNIDNEKQLRIAYEKIKQSMISLKNTDKDKMLSMQFTIYFKDIDENPTDLIDDSLSDIDLSLSSGNDSDLDNLIGLDSDLDLDMNPTQDQDVSSSTENKSDLHKCLNLEKSRKNGSNKAESEFIFNLDAADKVKFLQEKIRQRNERMKELRRLKILNVSARNVKKEGVNGFRSFNEPLINHALPVPMVGLEESHSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -