Rped004287.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000002:243167343-243179425[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 7.4e-05 0.0043 17.5 3.5 1 23 111 134 111 134 0.98 2 9 3.3e-05 0.0019 18.6 0.6 1 23 140 163 140 163 0.94 3 9 2.1e-05 0.0012 19.2 3.3 1 23 169 192 169 192 0.94 4 9 3e-05 0.0017 18.8 2.0 1 23 198 221 198 221 0.94 5 9 0.0012 0.068 13.8 5.8 1 23 227 250 227 250 0.95 6 9 7.4e-05 0.0043 17.5 0.3 1 23 256 279 256 279 0.95 7 9 0.00021 0.012 16.1 1.0 2 23 286 308 285 308 0.93 8 9 0.021 1.2 9.8 4.2 1 23 314 337 314 337 0.93 9 9 0.00059 0.034 14.7 0.3 1 23 343 366 343 366 0.93
Sequence Information
- Coding Sequence
- ATGAGCCATTCTCCACTGCTACAAGATGCTGATGAGACTCCCGTTCCAGTGAAAAGCGAATCCCAAGAAGATCAGCCAGAGGAGTCTGCATCTGAAGAAAACGTTGAATTTATTGAAGTGGTACCTGAAATCCCATCTTTTCAAGGTCCTGGTGATGAGAGCCCAGGGGACGATGTTTTTAATGATGCAGAAACTTATACAAATGCCAGCCTCTCAACTATTTCAGAGTTAAAAAAGTCAAGTTTAGGAGAATACTCTGGAGGAGATGACTCGAACAATGGTAATAGCGAGTTAATGCTTCCATCAAAGGAAATCAATGGAAAGAAATTATTCAGCTGCCCCCACTGCGATTACACAACAGATAGAGCCGTCTGTTTGAAGAGGCACGTCAAGACTGATCACACTTCGGAAAAGCATTTTGCATGTTCTTACTGTGACTACACTACCGTTCGTGCAGAACATCTTAAAGTTCATATCATGGCCAAGCACACCAAGGACCAGCCTCATTCATGCTCTTACTGCGACTACACTTGCGTGCAAGCGAGCAATTTGAAACAGCACATAATGGCTAAACATAAAAACGTCAAGCCTCATTCGTGCCCTTACTGTGACTACAGCGTGATTAGCTCGTCGTACCTGAAGCACCATATAATGGCGAGGCACACGGGGGAAAGGCCTCACAGGTGCCCGCACTGTGACTACTGCGCTGTTAGGGCGAACCACTTAAAGACCCACATAATGGCCAAGCATACTAACGAGATGCCTTTCCCGTGCCCCTATTGTGAATATTGTGCTGTCCGATCGGGCAACCTCAAGGAGCATATAATGGCTCGCCATACTAACGACAAGCCTAAAACGTGCCCCCACTGTGAATATAGTGCTGTATCCGCAAGCACTCTAAAGCGCCATATGACAGCCAAACATTCCGATGCAAAACCACACTCTTGCCCACATTGTGAGTTCACTGCGAAGAGGGCTGATCATATAAAGCAGCACATGACTGCTAAGCATAGCTATGAAAAACCTTATGCCTGCCAATACTGTGGTTATAATGCCGTACGCTCTGAACACCTCAGGCTGCATATTGCAGCCAAACATATGCTAGTATAA
- Protein Sequence
- MSHSPLLQDADETPVPVKSESQEDQPEESASEENVEFIEVVPEIPSFQGPGDESPGDDVFNDAETYTNASLSTISELKKSSLGEYSGGDDSNNGNSELMLPSKEINGKKLFSCPHCDYTTDRAVCLKRHVKTDHTSEKHFACSYCDYTTVRAEHLKVHIMAKHTKDQPHSCSYCDYTCVQASNLKQHIMAKHKNVKPHSCPYCDYSVISSSYLKHHIMARHTGERPHRCPHCDYCAVRANHLKTHIMAKHTNEMPFPCPYCEYCAVRSGNLKEHIMARHTNDKPKTCPHCEYSAVSASTLKRHMTAKHSDAKPHSCPHCEFTAKRADHIKQHMTAKHSYEKPYACQYCGYNAVRSEHLRLHIAAKHMLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -