Rped012164.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- iec1
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:52304588-52361933[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.6 4.4e+02 1.7 1.3 1 20 264 283 264 288 0.90 2 15 0.00017 0.0099 16.4 0.3 2 23 345 368 344 368 0.92 3 15 0.047 2.7 8.7 3.0 2 23 384 406 383 406 0.96 4 15 0.013 0.78 10.4 3.3 1 22 411 432 411 435 0.89 5 15 0.031 1.8 9.3 0.2 1 22 472 493 472 493 0.94 6 15 0.033 1.9 9.2 1.0 1 23 506 528 506 528 0.93 7 15 0.00013 0.0074 16.8 1.2 1 23 538 559 538 559 0.98 8 15 1e-05 0.00059 20.2 0.2 1 23 565 588 565 588 0.96 9 15 0.0002 0.011 16.2 2.0 2 23 597 618 596 618 0.96 10 15 2e-05 0.0011 19.3 1.4 1 23 625 647 625 647 0.98 11 15 7.5 4.3e+02 1.8 0.1 1 23 652 676 652 676 0.81 12 15 0.00067 0.039 14.5 1.1 1 23 682 705 682 705 0.97 13 15 0.00018 0.011 16.3 4.5 3 23 713 733 711 733 0.96 14 15 0.002 0.12 13.0 2.3 1 20 739 758 739 760 0.95 15 15 0.0047 0.27 11.8 0.2 1 23 770 793 770 793 0.95
Sequence Information
- Coding Sequence
- ATGGGAGCTAGCGATGAAGAGGACGACGATACTCATTTCTGCATTAAGTGTCACGCTACGATGCGGGGGCTCGACACCTATGTGGCGCATAGGAAGGCCAAGTGCAAGCCGGAAGGCGAAGTTCAAGCACACGATTTCTTCTCCTCCCTCAATCTGCAAAGCAGCAGCAAAGCAACAACACTCTGGCCATCTCCCGCATACACAGGGGGGAAATGGAGACCTGGCGGCATCGAAGCATCGCAAATACAGAGTTCCCAAGTTGAAGTGCCTCCTCCAGGACACACCGGTGGCAAGTGGAAGCCACAAGAGAACTCGGATCAGCCAGAAGAGCAGCAAAGAGAGGTTCCACCGCCAGACCATACTAGAGGAAAATGGGGCCCAGCTGAGAGACCGTGGGGTCAGCTCAGGAAAGGACTGTACTGGTGTGGTCCGTGCAACCGTAGGTTGAGTTCTAGGGTTGTGTACGACAGGCATATCAAGTCAGAATTACACTTCAAAAGAACTAACCAGTGGCCAGGATCGGAACCTCAAATAGGCAGAAGATCGAGAAGAAGGACCAAAGCAATCTTGTCTAGTTCTCTGAAGATTTTAAACCGCAGATATACGAAGGACAAGGAAGTAACGCGGAAGAGGAGAGGAGGTCCTCTGATCTGTGAAGCCTGCCGATGTAAGGTGTGGCCCCACCTGATCGGGAAGCACCTCGTGTCTCACTACCACTACAGGCACAGGAAGTCAGGATGCGAGGACTTCATCCTTCAGAACATGGAGAGTGTCGTCAGGCAGGCTCCGTTCCAGTGTGGCCTCTGCAAATTCTATACAAACACCGTTAGGCATTTCATGGACCACTGGGGATCCGAAATGCATCATCAAAACGATCTCAAGCTGGAAGGTATCTATTGGTGCGGATTGTGTAAGATTTCATGCAAAGATACGGTATCAATGGGTTATCACTTGCAGAGCGAAACTCACGGCGAAATGGTATCTGTTATCAATAGGTCTGTCCCCATCATAATACAGAAGAGAGTCTCCCTCAACTGTGAAGTCTGCACTAGAAGTTTCAGGTACAACGTGGAATTGAGACAACACGCTCGAACATGGGAGCATGCGCAGACGAAGAACACTTCTTCGGACGGCTACCAGGAAGTGACGTCTTGTGATGAATGCAACTACCGCTGCTTCTCCTTGCTCTCGTACCAGAGGCATATCCGCATCAAGCATGGCAAAGAGATGCATTTCTGCAGGAAGTGTGATCAGAAGTTCTCTACGCTGGAAGAAATCAGGAAGCATAGACGAGAAGTGAAGCACAGAGAAACTGGTGATTCTTCTTTGAAGAAATGTGTTCACTGTTTTGCGGAATTACAAGGATTAGCTGCACTGAGGGAGCACCTCCTTAGAGATCACCCCGATCAGAGGCATCGCTGCCCAAAGTGTGGTTCAGAGTTCGTGCTGAAGCAGGAGCTGGGCCAACACGTCAAGACGGGGCAGTGCGAGCCGGGAACGAGCTATGAAGGAAGTCACAAGTGTGACAAGTGTCCCTTCTCGACCAACTCGGAGTCGGAGTTGCTTCTCCACAATATACTCCACGGACAGCCGGCAACCTCGTCCGATCACTACCCGTGCCTCTACTGCGGCAAGACCTTCAAGAAAGACGTCCTCAAGAACCACGTCAAGACCCATACTTCAGAAAGACCATTCGCCTGTACAATCTGCGAAACAAGCTTCAGTAGACGAGATGCGCTGGCCAAGCACACCATGAGTGTCCACGAGCAGAACCCCAGAGATGCATCGAGTTGCAACCTCTGTCCTGCCCAGTTCAACTCTCAAAGGCATCTCAACAGGCACATGAGCCTTCACCAAGAACGTTCCAAGGATTTTGTTTGTCACAAATGCTCCGCTGCCTTCTACGACAAGGCGAGCCTGGAGAAGCACATACAGCGCCACGACGGTAAGAAGTTCCCTTGCACGGTGGATGGGTGCATCTTCAAGGGTAGGTCTGCAGCTGAGTTAAGGGTGCATAATAAGACCCATGGCTCCCTCAGGGACTACCACTGCACCGACTGCGAATATTCGGCCAAGACCAGAGGACAATTAGCCAAGCACGTGAAGTCTGTGCACTCGGAGAACAGGAGACTTGACTGCCCCCACTGTGACTTCACCACGAAGAACAGAACTCACCTGAGAAGGCACATCAATCTTCACACAGGACAGAAACCATATCAGTGCCCACACTGCTCCTTCTCGTGCACACTGCTAGACAACTTGCGAAAGCATGTTATCTACTCTAAACTGCACCCGGGCAAGATGTTGTACGAGTGTAGTGAGTGTGATATGAAGACGAACCTCTCGAAGGAGCTGAAGGCCCACCTAGTGTCGGAGCATGGCAGTAGTTCTGCAGCAGCTGCTAACCATGTAGCCAGTCTATATCGCCCTCTGCCAGAAGTTAGCAGTTTGGTTCCTGTCAGGGCTAACAGGAGGAAAAAGAAGTCTGAATGTGAGCTGGAAGGTGAAGATCAGCTGCCTACCCTGGCTTCCGTTGCTCTAACACCACACGAAGAGGATGTCATATTCATAGAAGTAGGAGAAGGATTAGAAGGAGTTCTATATCAATCTGCAGATCCGACTTTCCACCTGGAGAACTATCATACCGACAGGGTATAA
- Protein Sequence
- MGASDEEDDDTHFCIKCHATMRGLDTYVAHRKAKCKPEGEVQAHDFFSSLNLQSSSKATTLWPSPAYTGGKWRPGGIEASQIQSSQVEVPPPGHTGGKWKPQENSDQPEEQQREVPPPDHTRGKWGPAERPWGQLRKGLYWCGPCNRRLSSRVVYDRHIKSELHFKRTNQWPGSEPQIGRRSRRRTKAILSSSLKILNRRYTKDKEVTRKRRGGPLICEACRCKVWPHLIGKHLVSHYHYRHRKSGCEDFILQNMESVVRQAPFQCGLCKFYTNTVRHFMDHWGSEMHHQNDLKLEGIYWCGLCKISCKDTVSMGYHLQSETHGEMVSVINRSVPIIIQKRVSLNCEVCTRSFRYNVELRQHARTWEHAQTKNTSSDGYQEVTSCDECNYRCFSLLSYQRHIRIKHGKEMHFCRKCDQKFSTLEEIRKHRREVKHRETGDSSLKKCVHCFAELQGLAALREHLLRDHPDQRHRCPKCGSEFVLKQELGQHVKTGQCEPGTSYEGSHKCDKCPFSTNSESELLLHNILHGQPATSSDHYPCLYCGKTFKKDVLKNHVKTHTSERPFACTICETSFSRRDALAKHTMSVHEQNPRDASSCNLCPAQFNSQRHLNRHMSLHQERSKDFVCHKCSAAFYDKASLEKHIQRHDGKKFPCTVDGCIFKGRSAAELRVHNKTHGSLRDYHCTDCEYSAKTRGQLAKHVKSVHSENRRLDCPHCDFTTKNRTHLRRHINLHTGQKPYQCPHCSFSCTLLDNLRKHVIYSKLHPGKMLYECSECDMKTNLSKELKAHLVSEHGSSSAAAANHVASLYRPLPEVSSLVPVRANRRKKKSECELEGEDQLPTLASVALTPHEEDVIFIEVGEGLEGVLYQSADPTFHLENYHTDRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -