Rped013807.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:147162285-147171771[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.022 1.3 9.8 2.5 1 23 185 208 185 208 0.93 2 12 0.0011 0.061 13.9 1.3 1 23 214 237 214 237 0.94 3 12 0.002 0.11 13.0 0.1 2 23 244 266 243 266 0.94 4 12 7.6e-05 0.0044 17.5 2.6 1 23 272 295 272 295 0.96 5 12 0.00026 0.015 15.8 0.4 1 23 301 324 301 324 0.94 6 12 0.0061 0.35 11.5 0.2 1 23 330 353 330 353 0.93 7 12 0.00062 0.036 14.6 0.2 1 23 359 382 359 382 0.94 8 12 9.5e-05 0.0055 17.2 0.2 1 23 388 411 388 411 0.96 9 12 0.00092 0.053 14.1 4.9 1 22 417 438 417 440 0.90 10 12 0.00026 0.015 15.8 2.2 1 23 446 469 446 469 0.94 11 12 0.036 2.1 9.1 2.7 1 20 475 494 475 498 0.94 12 12 0.0014 0.082 13.5 5.4 1 23 504 527 504 527 0.95
Sequence Information
- Coding Sequence
- ATGAGTTTCTCCCATAATCTGAACGCCGTCCCGGGAACTAGCCTTGATGGAGTTCCTGTCAAGAAAGAACCTGAGTACTATTTGGATAATGTGCCATCTACTTCAGCTTCTCCAGGATCCAGTCGGGAATATGTACCTGTCAAAATAGAGCCTCATTACAGTTTGGAGTGTGAGCCATCTACTTCAGGAGTTGGATATTCACTGAAGCATATAAAGGATGAAGCTTCTCTAGAACTGCCAATGGATTTTGAAGAGCTGGAAGATGGAGAGAAGTCAGTCTACATTTGCTATTACTGCCAGCGAGATTGGGACTCCTTCACTGCGCTCAAGGGATGTGTCAGGAGTTGCTTCAGACGTACTATCAATAAACCAAAGAAATGCTCATCAGCAACTTCTAGTAACAGTGATCATTTGTCCTGTAATATGAAGAATCACAATCTGTCTAGATGTACAATGGCCAAACCTCACTCCTGCACTCATAGTGAATGCAATGATGTAAAGCTGGGAACTCTGAATTGTCACATAGAGGCCAGACATACAAATGACAAACCTTACTTTTGCCCTTATTGTAATTTTAGTACGATTCGGGTAAGTAATCTAAAGTGTCACATACAGGCTAAACATTTAAAAGAAAAACCTCACTCCTGTCCCCAATGTGATTATAGTTCTGCTCATGCAGGCAGTCTAAAGTATCACATACAGGCTAAACATTCAAGTGACAAACCACTCTCCTGCCCCTACTGCGAATACACTGCTATTCAGGCTAGCTATCTAAAGTATCACATACAGGCTAAACATTTAAAAGAGAACCCCCATTCTTGCCCACATTGCGAGTACAGTACTGTTCAGCCACGTAATCTAAAGAATCACATATTATCTAAACATTCATGTGACAAACCTCACCCCTGCCCCTTCTGTGAATACAGTACTAGCCGGGCTGGCAGTCTAAAAATTCACATACAGGCTAAACATTCAAGTTACAAACCACACTCATGCCCCTACTGTGAATACAGTACTGTTCTGGCTGGCAGTCTAAAACTTCACATACTGGCTAAACATTCAAGTTACAAACCACACTCATGCCCCTACTGTGAATACAGTACTGTTGTGGCTGGCAGTCTAAACCGTCATATACTGGCTAAACATTCAAGTGATAAACCTCATTCCTGCCCTTATTGTGAATACAGTGCTGTTCAGGCTAGTGGTCTAAAGCGTCACATACTCTCTATACATCCTATTGTTAAACCTCACTCCTGCCCCCACTGTGAGTACAGTACTGTTCATGCTAGCAATCTAAAGCATCACATAGTGGACAAACATTCAAAAGGCAAACTTCACTACTGCCCCTACTGTGAATATAGTACTGTTCACAGAGGCAGTCTAAACCGCCACATACTGGCTAAACATTCAAGTGATAAACCTCACTCATGCCCTTACTGTGAATACAGTGCTGTTCAGGCTCGCAGTCTAGAGCATCACATACTCTGTAAACATTCAAGTGATAAACCTTACTCATGCTCCTATTGTGAATTCAGTGTTGCTCACAAGGACCATCTGAAGCATCACATTCAGGCTAAGCACAAAACAGAACAATCTCCCTTATTGTAA
- Protein Sequence
- MSFSHNLNAVPGTSLDGVPVKKEPEYYLDNVPSTSASPGSSREYVPVKIEPHYSLECEPSTSGVGYSLKHIKDEASLELPMDFEELEDGEKSVYICYYCQRDWDSFTALKGCVRSCFRRTINKPKKCSSATSSNSDHLSCNMKNHNLSRCTMAKPHSCTHSECNDVKLGTLNCHIEARHTNDKPYFCPYCNFSTIRVSNLKCHIQAKHLKEKPHSCPQCDYSSAHAGSLKYHIQAKHSSDKPLSCPYCEYTAIQASYLKYHIQAKHLKENPHSCPHCEYSTVQPRNLKNHILSKHSCDKPHPCPFCEYSTSRAGSLKIHIQAKHSSYKPHSCPYCEYSTVLAGSLKLHILAKHSSYKPHSCPYCEYSTVVAGSLNRHILAKHSSDKPHSCPYCEYSAVQASGLKRHILSIHPIVKPHSCPHCEYSTVHASNLKHHIVDKHSKGKLHYCPYCEYSTVHRGSLNRHILAKHSSDKPHSCPYCEYSAVQARSLEHHILCKHSSDKPYSCSYCEFSVAHKDHLKHHIQAKHKTEQSPLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -