Rped013750.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:145899783-145904816[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00015 0.0087 16.6 1.7 2 23 183 205 183 205 0.95 2 10 0.027 1.5 9.5 0.6 1 23 211 234 211 234 0.92 3 10 9.9e-05 0.0057 17.1 1.5 1 23 240 263 240 263 0.94 4 10 0.00055 0.032 14.8 0.4 3 23 271 292 269 292 0.93 5 10 0.00019 0.011 16.2 0.9 1 23 298 321 298 321 0.94 6 10 0.0012 0.067 13.8 0.3 3 23 329 350 327 350 0.93 7 10 1.9e-05 0.0011 19.4 1.2 1 23 356 379 356 379 0.94 8 10 0.0011 0.062 13.9 0.5 3 23 387 408 385 408 0.93 9 10 0.00043 0.025 15.1 1.1 1 23 414 437 414 437 0.94 10 10 0.0012 0.072 13.7 0.4 3 23 445 466 443 466 0.93
Sequence Information
- Coding Sequence
- ATGAGTTTCTCTCCTAATCTAAATGCTACTGCAGGTTCTAGCCTTGATGAAGTTCCTGAGAATAAAACATCCGAGTACTCCATAGATGATGAGCCATCTACTTCAGGTGCTGGAGGTGTAGATTTTGACATGATCTCCATTAAGGAAGAAGAGGGTTATTCTGATGAGGAAAGACTTTCTACCTCTACAGCTGCTCCTGGATCCAGCCTTGATGGAGTTCATGTCAAGAAAGAACCTGACTACGACATAGATGATGAGATGTCTTCTTCAGCAGCTGCTGGAGGTACAGATTTTGACCTGTGCTCAATTAAAGAAGAAGATTTTTCAGACGAGGAGGGAATCCTCGCTGTGTCTACAGAGTTACCTGAGAAAAGACTTAACACACCACCCAATGGAGTAAAAAAATCAATGAGCAACACAAATTCAAGGCGAGGTGTAAATTTATCACAAGATTACTCAGCTGCAACTGCTGTAGATTACTGTACTGTTCAGATTGGCACCATAAATCAAGACTTACAGGCTAAACATCCAAGAGATAAAACTCGCTCCTGTCCCTACTGTGAGTACAGTACTGTTCAGACTAACCATCTAAAGCGTCACATTCGGGCTAAACATTCAAGTGACAGACCTCACTCTTGCCCCTACTGTGAATACCGTACTGCCCATGCTGGTGATCTAAAGCCCCACATACTGGCTAAACATTCTAGTGATAAACCTCACCCATGCCCCCACTGTGAATACAGAGCTGTTCGGTCTTCTGATTTGAAGCGGCACATACAGGCTAAGCATTCAAATGATAGACCTCACTTGTGCCCGTACTGTGAATACAGTGCTGTTTACAGTGGGAATCTAAAGAAGCACATACAGGCTAATCATTCTAGTGATAAGCCTCACTCCTGCCCCCACTGTGAATACAGTGCTGTTCGGCCTTCTGATTTGAAGCTGCACATACAGGCTAAGCATTCAAATTACAGACCTCACTTGTGCCCCTACTGTGAATACAGTGCTGTTTACAGTGGGAATCTAAAGCAACACATTCAGGCTAATCATTCTAGTGATAAAGCTCACCCATGCCCCCACTGTGAATACAGTACTGTTCGGCCTTCTAATTTGAAGCTGCACATACAGGCTAAGCATTCAAATGATAGACCTCACTTGTGCCCGTACTGTGAATACAGTGCTGTTTTCAGTGGGAATCTAAAGAAGCACATACAGGCTAATCATTCTAGTGATAAACCTCACTCCTGCCCCCACTGTGAATACAGAGCTGTTCGGCCTTCCGATTTGAAGTTGCACATACAGGCTAAGCATTCAAATGATAGACCTCACTTGTGTCCCTATTGTGAATACAGTGCTGTTTACAGTGGGAATCTAAAGCAGCACATTCAGGCTAAACATTCCAGTGATAAATACGAGCTAGGCACAAAGAACACCAATCTCCCTTATAGCTAA
- Protein Sequence
- MSFSPNLNATAGSSLDEVPENKTSEYSIDDEPSTSGAGGVDFDMISIKEEEGYSDEERLSTSTAAPGSSLDGVHVKKEPDYDIDDEMSSSAAAGGTDFDLCSIKEEDFSDEEGILAVSTELPEKRLNTPPNGVKKSMSNTNSRRGVNLSQDYSAATAVDYCTVQIGTINQDLQAKHPRDKTRSCPYCEYSTVQTNHLKRHIRAKHSSDRPHSCPYCEYRTAHAGDLKPHILAKHSSDKPHPCPHCEYRAVRSSDLKRHIQAKHSNDRPHLCPYCEYSAVYSGNLKKHIQANHSSDKPHSCPHCEYSAVRPSDLKLHIQAKHSNYRPHLCPYCEYSAVYSGNLKQHIQANHSSDKAHPCPHCEYSTVRPSNLKLHIQAKHSNDRPHLCPYCEYSAVFSGNLKKHIQANHSSDKPHSCPHCEYRAVRPSDLKLHIQAKHSNDRPHLCPYCEYSAVYSGNLKQHIQAKHSSDKYELGTKNTNLPYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -