Rped013784.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:146716185-146730421[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.2 1.9e+02 2.9 0.5 1 9 117 125 117 134 0.72 2 15 0.029 1.7 9.4 0.3 3 23 189 210 187 210 0.95 3 15 0.0023 0.14 12.8 1.8 1 23 216 239 216 239 0.94 4 15 0.00092 0.053 14.1 1.1 1 23 245 268 245 268 0.94 5 15 0.00034 0.02 15.4 0.9 1 23 274 297 274 297 0.94 6 15 0.009 0.52 11.0 0.0 1 23 303 326 303 326 0.94 7 15 0.00027 0.016 15.7 2.4 1 23 336 359 336 359 0.94 8 15 0.022 1.3 9.7 0.2 1 23 365 388 365 388 0.96 9 15 0.066 3.8 8.2 0.2 1 23 394 417 394 417 0.94 10 15 2.7e-05 0.0016 18.9 2.1 1 23 423 446 423 446 0.96 11 15 0.00059 0.034 14.7 0.1 1 23 452 475 452 475 0.94 12 15 0.73 42 5.0 0.9 10 23 490 504 481 504 0.82 13 15 0.00021 0.012 16.1 4.9 1 23 514 537 514 537 0.96 14 15 0.11 6.6 7.5 0.2 6 23 545 563 543 563 0.90 15 15 0.00042 0.024 15.2 0.6 2 23 570 592 569 592 0.94
Sequence Information
- Coding Sequence
- ATGATTGCTGCTCCGGGAACTAGCCTTGATGGAGTTCCAATCAATGAAAAACCTGACTGCTATTTGCATGACAAGCCATCTACTTCAGCTGCTGGAGTTGTAGATTCTGTCCCGAGCTCTATTATTAAAGAAGAGTATTCTTCGTACGAGGGAAGCCTCACTATGTCTACAGCTGCTGGAGATATTGATATTGGGCCAAGCTTCATTATCAAAGAAGAGGATTCTTCAGACAAGGAAAGTCTCTGGATTCCTAGAGGCAGTGAACAAGTGTGGATACCAATTAAACAGGAACCAGCTGTGGAACTAGGCACTTCTTATGGAGAGCTTGAACATAAAGATAAAGCAGTCTTCATCTGCCATCACTGCCAGCGAGCCTGGAAATCATTCATTTCACTAAGGCGCTGTGTGCACAAGTGCTTCCATTCAACAGTCACTAAATTCAGCCTCAAAAAGTCACCATCCACTGGAGTAAATACTTCAAGAAGCTATAAAGGTTCAAGTGGAAGAGTGAATTTATCTAAGGAACGCTTACCTGCAAGTGGTGGGGATGAGAAATGTTTAGCCTGTTATGAATGCGGTTACAGCACTAATTATAGATACATTTTAAAACAGCACATACAGGTTAAACATTCAAATGACAAACTTCACTCCTGCCCCTACTGTGAACACAGTACTAGTCAGGCTAATGCTCTAAAATATCACATACTGGGTAAACATTTGAGTGTTAAACCTCACTCCTGCCCCGACTGTGAATATAGTGCTGTTCGGGCTTGTGATCTAAATCGTCACATACAAGCTAAACATGTAAGTGTTAAACCTCACTCATGCCCTTATTGTGAATATACTGCAGTCCAGCCTGTTAATCTAAAGCATCACATAATGGCTAAACATTCATACGAAAAACCTTACTCCTGCCCCGTTTGCAAATACGCTGCTGTTCGGGCTGACCGTCTAAAGGAACACATACTTGCTAATCATTCAAACGAAAACTCATCATTCCAACCTCACTCCTGCCCCCATTGCGAATACAGTTCTGTTAGGTCTAGCAGTTTAAAACTTCACATACAGGCTAAACATTTAAGCGTTAAACCTCATTCCTGCCCCTACTGTGAATACAGTACTGTTTGGGCTGGTGCTTTAAAAGTTCACATACAGAGTAAACATTTAAGTGTTAAACCTCACTCCTGCCCCGACTGTGAATACAGTACTGCTTGGGCTCGTGATCTAAAACTTCACATACAGGCTAAACATCAAAGTGTTAAACCTCATTCCTGCCCCTACTGTGAATACAGTTGTGTTCGGGCTGCTAATCTAAAAGTTCACATACAGAGTAAACATTTAAGTGTTAAACTTCACTCCTGCCCCTACTGTGAATACAGTGCTGTTCGGGCTGGTGATCTAAAAGTTCACATACAGGCAAAACATTGTAGTGATAAACCTTACTCCTGCCCTCATTACGAATACAGTGCTGCTCGGTCTGGCCATCTAAAGCGTCACATACTATCTAAACATTCTAATGACTACTCATCATTCCAACCTCACTCCTGCCCCCATTGCAAATACAGTTCTGTTAGGTCTAGAGATTTAAAACGCCACATACAGAGTAAACATTTAAGTGTTAAACCTCACTCCTGCCCCTACGGTACTGGTCGGGCTAGTGATCTAAAACGTCACATACAGGGGAAACATGTAAGCGTTAAAACTCTGTCGTGCTCCTACTGTGAATACAGTACTGCTCGGAGAGGCAGTCTGAAATCTCACATAAAAGCTAAGCATTGTAGAGAGAAATCTCCCTTATAG
- Protein Sequence
- MIAAPGTSLDGVPINEKPDCYLHDKPSTSAAGVVDSVPSSIIKEEYSSYEGSLTMSTAAGDIDIGPSFIIKEEDSSDKESLWIPRGSEQVWIPIKQEPAVELGTSYGELEHKDKAVFICHHCQRAWKSFISLRRCVHKCFHSTVTKFSLKKSPSTGVNTSRSYKGSSGRVNLSKERLPASGGDEKCLACYECGYSTNYRYILKQHIQVKHSNDKLHSCPYCEHSTSQANALKYHILGKHLSVKPHSCPDCEYSAVRACDLNRHIQAKHVSVKPHSCPYCEYTAVQPVNLKHHIMAKHSYEKPYSCPVCKYAAVRADRLKEHILANHSNENSSFQPHSCPHCEYSSVRSSSLKLHIQAKHLSVKPHSCPYCEYSTVWAGALKVHIQSKHLSVKPHSCPDCEYSTAWARDLKLHIQAKHQSVKPHSCPYCEYSCVRAANLKVHIQSKHLSVKLHSCPYCEYSAVRAGDLKVHIQAKHCSDKPYSCPHYEYSAARSGHLKRHILSKHSNDYSSFQPHSCPHCKYSSVRSRDLKRHIQSKHLSVKPHSCPYGTGRASDLKRHIQGKHVSVKTLSCSYCEYSTARRGSLKSHIKAKHCREKSPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -