Basic Information

Insect: Riptortus pedestris
Gene Symbol: -
Assembly: GCA_019009955.1
Location: GWHBAZH00000004:25003285-25026216[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00044 0.025 15.1 1.0 1 23 238 260 238 260 0.98

2 10 0.0025 0.15 12.7 5.6 1 23 291 314 291 314 0.96

3 10 9.7e-05 0.0056 17.2 2.5 1 23 320 342 320 342 0.95

4 10 5.6e-06 0.00032 21.1 0.4 1 23 348 370 348 370 0.95

5 10 0.00046 0.026 15.0 1.7 1 23 376 398 376 398 0.97

6 10 4.3e-08 2.5e-06 27.7 2.2 1 23 404 426 404 426 0.98

7 10 0.0047 0.27 11.9 7.8 1 23 432 454 432 454 0.98

8 10 0.067 3.9 8.2 2.7 3 23 462 482 460 482 0.96

9 10 7.1e-06 0.00041 20.7 0.2 1 23 488 510 488 510 0.98

10 10 6e-07 3.5e-05 24.1 4.7 1 23 516 538 516 538 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00044	0.025	15.1	1.0	1	23	238	260	238	260	0.98
2	10	0.0025	0.15	12.7	5.6	1	23	291	314	291	314	0.96
3	10	9.7e-05	0.0056	17.2	2.5	1	23	320	342	320	342	0.95
4	10	5.6e-06	0.00032	21.1	0.4	1	23	348	370	348	370	0.95
5	10	0.00046	0.026	15.0	1.7	1	23	376	398	376	398	0.97
6	10	4.3e-08	2.5e-06	27.7	2.2	1	23	404	426	404	426	0.98
7	10	0.0047	0.27	11.9	7.8	1	23	432	454	432	454	0.98
8	10	0.067	3.9	8.2	2.7	3	23	462	482	460	482	0.96
9	10	7.1e-06	0.00041	20.7	0.2	1	23	488	510	488	510	0.98
10	10	6e-07	3.5e-05	24.1	4.7	1	23	516	538	516	538	0.99

Sequence Information

Coding Sequence: ATGGGATCAACAATAGAATTGTACAATTCAACCTTTTGTAGGCTTTGTTGTGAGGATTGTCGACAGTCTGGAATATTTATTTTCAAAGGATCAACATCTCCTGAAAATCTAAGCATTAGTATAAATAAATATCTCCCAGTTAAGGTTGAAAATGATGGGAAACTACCTCAGACAATTTGCTCAAATTGCCACATTCAATTACATGCCACCATATCCTTCTTCAATATCCTCGATGAAGGTCAGAAGAAGTTGCTTCAGCTTGCATTTCCTCAAAAAGTCACAACAGAAGGTTCTACATTCAATATTGTCGACAACACACTCCCTTCTTCTGACCAAGGAATCAAAAACCACCATAAGAGAGGGCGGGGGAGGCCAAAGAAGGAGTCATTGGCCCCTCCAGCTGAAGTTCACCAACCACCGGCTTCTGCTGTAGAAGATTGTCCTTTGATTCCGTCTACTCCAGAGCCACAAGACCAATTTGGCAAGTCTAGAAGAAAGAGAAAACTCCCTAGTAGGTTCAGTTCAACACTTCAAGGAAAGGAATTGGAGAAGGTATACAGAGATGTTGGTATTCCTGAAGATGATACAAAGGTCACTAGTATATCAGCTGATTCGACTGTCATTGGAAAAGTAGAAACATTAAATGGAGAGGATCTTGGTGATGTGATGGTACTTCAATCAGCTGAGGAAGTGAATAGACAACATACAAATTATCGATGTGAGACTTGTAATCAGATCTTTACACAAGAACCTAAATTTTTAGAACACCAGCGACTACATGCTAAAGAATCCTGTTCTGCATCGAAAACTCAAGCCCCTGGAGTGAATAATTCAAAGAAAGATCAGTGCGAAAAGAAGGATGGTGTCTCCCATGAATGTGATTCATGTGATAAGAAGTTTAAGCACTACTCATCATTGTCTTATCACAAGGAAACCGAGCACAATGATGGTAGGAGATACCTTTGTTATCAGTGCCCTCGTGCATTCAAGCATCGTCAGCTGCTGCGAAGGCACCAGCTGGTTCATAGCTCTGTCAGATCTTATAACTGCCAGGATTGTGGTGCAAGTTTTAAGACGAAAGGGAACCTCATAAACCATTCAACGATCCATACTGGACAAAAGAAATACTTCTGTGAGCTCTGTGGCCAGCTGTTTGCTCACAAAACCTCTCTCAACCTCCATACCCGCTGGCATAATGGTGAAAAACCTTTTGAATGCCACATTTGTCAAAAACGATTCACCCAGAAAGGAAATCTTCAAGAACACATTAGGATTCATACAGGAGAGAAACCGTTTGTGTGTCATTTGTGCAATAGAAGATTCACTACGTCATCGCAGTGCAAATTACATTTGAAGAGGCATTCTGGGGAACGACCTTGGTTTTGCACTTTGTGTGGGAAATCCTTCCTCAATAAGGCAACATGGCGCTGTCACATCAGAAGGCATAAAGGAGAGAAACCTTATGATTGTGAGACATGTGGAAGGAACTTCCCCGAGCTGTGGGCCCTCAAGAAGCATATTCGAACCCATACTGGCGAAAAGCCTTACAAGTGCAACTTGTGTGATAAGGCATTTTCTGATTGCTCAAATTTGACAAAACATAAGAAATCTCATCTAAAAGGAAGATTATCAGAAGAAGATGGTGAAGAGCAAATAGTTTACTTGAGTTACACAGACCCATTAAACCCTACTTCTGAGGTATCAGAAAAGTTTATTGTTGAGAGCAAGGCGGATCAAGGAGCAAATGACGAAGTTATGATGATGCAAGTGATGGATGAGATGGGAAATCCCCTGAAGTTTACTTTCCAAGATGGCACTCAACTACAAGTGACTACACGTGATGGTAAATCCCTGGAGGTCCAAACTGCAGATGGCCAGACTATCCCCGTGAGGCTGACTACAGACTCTGGTGAAACTATCTCTCCTGAGCTCACTCCTGTCGTTATTCCATCTATAGGAGATTCATTGGTTGATATTGGCACCATAGAACTTGTAACCAATGAAGAAGAAACTCAAACACTAACACTTCCTCAGGACTTCCTGCAAATATCATCTAACATGTAG
Protein Sequence: MGSTIELYNSTFCRLCCEDCRQSGIFIFKGSTSPENLSISINKYLPVKVENDGKLPQTICSNCHIQLHATISFFNILDEGQKKLLQLAFPQKVTTEGSTFNIVDNTLPSSDQGIKNHHKRGRGRPKKESLAPPAEVHQPPASAVEDCPLIPSTPEPQDQFGKSRRKRKLPSRFSSTLQGKELEKVYRDVGIPEDDTKVTSISADSTVIGKVETLNGEDLGDVMVLQSAEEVNRQHTNYRCETCNQIFTQEPKFLEHQRLHAKESCSASKTQAPGVNNSKKDQCEKKDGVSHECDSCDKKFKHYSSLSYHKETEHNDGRRYLCYQCPRAFKHRQLLRRHQLVHSSVRSYNCQDCGASFKTKGNLINHSTIHTGQKKYFCELCGQLFAHKTSLNLHTRWHNGEKPFECHICQKRFTQKGNLQEHIRIHTGEKPFVCHLCNRRFTTSSQCKLHLKRHSGERPWFCTLCGKSFLNKATWRCHIRRHKGEKPYDCETCGRNFPELWALKKHIRTHTGEKPYKCNLCDKAFSDCSNLTKHKKSHLKGRLSEEDGEEQIVYLSYTDPLNPTSEVSEKFIVESKADQGANDEVMMMQVMDEMGNPLKFTFQDGTQLQVTTRDGKSLEVQTADGQTIPVRLTTDSGETISPELTPVVIPSIGDSLVDIGTIELVTNEEETQTLTLPQDFLQISSNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -