Rped013484.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:132529581-132542967[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.034 2 9.2 9.0 1 23 66 89 66 89 0.97 2 22 0.0019 0.11 13.1 2.8 1 23 165 188 165 188 0.96 3 22 0.051 2.9 8.6 5.8 1 23 193 216 193 216 0.97 4 22 4.7 2.7e+02 2.4 0.1 1 9 254 262 254 274 0.93 5 22 0.012 0.69 10.6 0.5 1 23 283 306 283 306 0.94 6 22 0.0022 0.13 12.9 0.8 2 23 313 335 312 335 0.92 7 22 0.00067 0.039 14.5 0.6 2 23 342 364 341 364 0.93 8 22 0.0011 0.067 13.8 2.4 1 23 370 393 370 393 0.92 9 22 0.014 0.83 10.3 1.1 1 23 399 422 399 422 0.96 10 22 0.14 8.4 7.2 5.2 1 23 428 451 428 451 0.95 11 22 0.055 3.2 8.5 1.8 1 23 457 480 457 480 0.96 12 22 0.0026 0.15 12.6 3.0 1 23 486 509 486 509 0.97 13 22 0.54 31 5.4 3.3 1 23 515 538 515 538 0.96 14 22 0.037 2.1 9.0 0.6 1 23 542 565 542 565 0.96 15 22 0.00069 0.04 14.5 1.1 1 23 570 593 570 593 0.97 16 22 0.44 26 5.6 4.2 3 23 600 621 598 621 0.96 17 22 6.8e-05 0.0039 17.6 3.7 1 23 821 844 821 844 0.98 18 22 0.00083 0.048 14.2 2.5 2 23 947 969 946 969 0.96 19 22 0.0081 0.47 11.1 5.2 1 23 1025 1048 1025 1048 0.97 20 22 0.14 8 7.2 0.4 2 23 1051 1073 1050 1073 0.91 21 22 0.00019 0.011 16.2 2.1 1 23 1079 1102 1079 1102 0.96 22 22 0.00078 0.045 14.3 3.1 1 23 1108 1131 1108 1131 0.94
Sequence Information
- Coding Sequence
- ATGATGATTGACAAGGATAGAGTTTCTGTGAAAGAGGAACCCCTAGACGACGTATCTCTTGGCTGCCTCAACTCATCCAACAGGGATGCGTCTGGCACTGGCTATGGACATGTACCTGTTATTATTAAGGAAGAAGTGATTATTCCAGACTGTTTAGATACATCTTCTACTTTGGGTATTGCAAGAATCAGCAGTTTCATTTGTCATTATTGCCATAAGCTGTACCAGTCTAGGCATGCCTTCAAGAAGCACATTAGGAAACTCCATAATAAAATATCAGTCAAAAGAAGATTACCTAAAAAAGTACCAAATATTGTTACGAACATCCAGCCCTATATTCAGCTAACAGAACCAGTGAAAAGAGGACATGGAAGGCGATGTACAGGGACTCCAAAGAAGAAGGCTTACCGTTGTATTAAGTGCGACTTTGAAACAGCTCATTTTCATAGCTTAAGACTTCATAGAATGTACAAGCATTCTACAGAGAGACCGCATAAGTGTTCACAATGTACTTACTCCGCAGTTACTTCTAGCGATTTGAAGAAGCACATCATGTATAAGCATGATAATAAGTCTTACCAATGCCAGCATTGCCCCTTTGAAACTTCCAAACAGCATCAGTTAATGATGCATCTCAAATACAAACATAGAAATGGAGAAAACACATTCTCATTCCTCGACTTAGGGATTCCATTTCAAGAAGGGAGTGAAGTGTTAATTCCCGAATGTCGCAGGAGTCATAGTACCAAAACCGAAACGTTTAAGTGTGATCATTGTGATTACACTGCACTTCTAGCTGAACAAGTTAGAGTACACTCCAAGTTCAAACATTCCATAGTTATTCCCCATAGGTGTTTGATGTGCGATTACTCGAGCGAAAATGGCTCTGAGCTAAAGAAACATATATTGGCTGAGCACGAGAGTGAGAAGCCATTGACATGTCCTTATTGCGACTACAGCTGTAGATCATCGTTGGGGTTGAAGAGCCACATTACGGCTGATCATATGGAGGAGCGGCCCCTGCCGTGCGGCTACTGCTCGTACAGGACGACCAGCAAGAGCTCTCTCAGGAAGCATATACTAGCAAGGCATTCCAATGACAAGCCTTACGCCTGCCACCACTGCCCTTATCGCACCGTCTCTAGCAGCGCTCTCAAGAGGCACACTCTCGACATGCACTCTACAGACAAGCCTTACTCATGCCCTGAGTGCACTTACACGTGTGTACGGCCCAATCGCATGAAGTGGCACTTAGCCTCCCAACACAGCAGCGACAAGCCCTTCCCCTGCCCTCACTGCCAATATAGAACGCTAACAAAATCTAAACTAAAGCTCCACATGATGCACAGGCATACAAACGTCCGACCTCACCAGTGCCCATTTTGCGAATACAAGTCAGTCACAAAAGAACAAGTGAAATTACACATTTCGCGCAGCCATACTAAAGAAAGGCCCTATTCGTGTAGTCATTGTTCCCATGCATCGATTTCAAAGTCGGAATTAGAAAAACATATTTTGTCTAAACATTCCGTTGATCGTCCTTACGCTTGCTCAAAGTGTTCATACAGAACTGCATGTGAATACAATTTAAAAAAACACATCAAACAACTTCATAATCAGCCATACCCTTGTTTGCAGTGTACTTTTTCAGCTAAAACAAATGAATTACTAGAAAAGCACTTGTCCTCAAAGCATATGAATAGGTTTTATAATTGTCCCTTCTGTGACTATAGTGCTCGTACCAAGCCTTCATTAAATCGGCATTTTAGAGTTAAACATAATGACATGGTTCTAGCGTGTGATTTTTGTAATTATAAAACAAATAGATCTTGTTATTTGGATAAGCATTTGAAACGCAAGCACAGTGGAAAATTGAGTAAAGAAGTATGTTTAGATACCCTAGTGAATGATAGGTTGGAGCCAGTACAATTGCCTATAAAAGGAGTGAATAAAATCTCTGTAGGCGAAAGTAAAAAAGAAACATACTTGGACTCTCTAAAACTGAGTTTCAAAGAAATTATAGATGACTATACAAAAGGTTCCCTGGAAAAAATCACTGTGCCCTCCGTGTTAAATAGGACATCCTCCCTTCAAGACAGCGATATAAAAATAAGCATGGAACCTCTCGGGCAAAATGGGGAAGGGTCAGGCATGGATCCTCTTCAGAAAAGTGAAAATAAAGTAACCATGGATCCTCTCGGTGTAAATATAGAAGGTTTTAAGGGATCTATAGATTTAACATTGAGAGATCTCACTAAACCTACGGTAAAACCAGTTAAAATTACTGAAAAAAGTAATCAATCAGTCTATGAAGATAAACAAGAGGTGTGTTTAGACCCTTCATTTTGTAATGATGAAATAATATTCATTGGCCCTAATGATGGTGAATGCAACCAGAATGAAGTTGTTCAAAATGAATTAAATGATCCTAGATTAGCCAAAATATATGATGAAAAACATTTTAAGTGCCCTCATTGCTCCTACAGAACTAAAAGACGTGCTGATCTAAGAAAGCATGTTAGACGTATTCACACTGTAGACGAATTTTTACACTTTGAAACACAGTATAAAGGTCTGAGGAGAGTGGGCTTAAATATCCAGAATCTTGTTGAGAAAAGTAAACATAAAATTATCGAAGATTCAGTAAGGGAAAGTGTAAATGGAATACATAAGAGCCCTATAAATTCGAGACAGAAAGAAATTTTCACCCACCCTGTAAATGATGAAATAATGTCCAAAGGCTCTGAGGGAAAATGTCAAGAAAAAAACATCCAGTATGTTTTCATCCAAAATCAATTGCATAATTCTAGTTCAGCTAAAATACCTGATTATCGCCTTAAATGCCCTCATTGCTGGTATGGAACTAATAGATCTTATGATTTCAAGAGACATGTTAGACGAATGCATGCTGTACAAGAATCTTTACAATTAAATGCTCAGAACAAAAGTTGGAAGATAAGGCAGGATGCCCAGGACTTTCAGAAAGAAGTAAAGGATTCCCAGGTTCCAAGAATAGCTAATCAAAATGTGGGATTAGGAAATCCAGGTTTTAAAACTCCTGTTGATCGGCCTTTCAGTTGTACTCAATGTGATTATTCAACCTCTTTGAAGGATTGTTTAAGAAAACACATGACTAGAAAGCATGGTCTTCCCTGTGAACACTGTAGTTATGTAGCTGTTCGTGAAGCACAACTAGAAAAACACTTTTTGTACAAGCATACCAACCTAATGACATTTATATGTCCACATTGTGATTATAGATCATTTACATCTTGGACTCTAAAAAGGCATATAAAGACAGTTCATTTCAACAACACTATTTATTTATGTCCCCATTGTGATTATAACACTACTAGAAGCTCCGATTTTACACGACACGTTTCACGAAAACACCCAGATGCAGAAAATGGAGATGGAGAATCTTCCGATCACAAAGAGACAGGAGATGAATCATTTATACATCTAGTAGGCAAAGGGGCAATCAATCTTCATGATTATGGGAATGAAAAGCGAATAAATCATACTGAAGGTGATAAATCATGTAAAGAATGTATAGCCAGAGACCCATTTGCTGAAACCGAACCAGATAGAATATATTTAGAGCCTCATGCTGAAAGTCGAGAAAGAATATGTCTAGACCCTCTTGGGGAAAGAGAGGCTATAGTACCCATAGACCCTCTTCGGGGAAGAGGAAGCCCAGTGCCTGTAGACCCTCTTTGTGAAAGTCGAAAGGGAAAATGTTTAGATCCTCTTCAGGATCAAAAGTGTGCAGAACCTATAGACCCTCTTCATGAAATAAAAGGAAGAACTAATACCAACTCTCCCTCTAAAATTGGGGGAGGAATACTTGTGGATCCTACTTATTCAAAGTTAAAAGAACTACTCCGATGTCCTAAAGATAGACACGAAAAAAGAGTATGCATAGACCCTGTAAATGTAAGACTAAATAGTATAAATGCTCTCTATACAGATTCGCTAAGTTTAGTTTGTCATGGAGAATATAAAGAAGAAGTAGATGTAATCCCTTTTGAGGAAAGAGAAGAAATAAGTATGGACCCTCTTGATGATATGGTTGGAGAAATACATGTTGACCCTCTTGAGGAAAGAGGTGGAGAAATAAATGTGGACCCTCTAGAGGTTAGAGATGATGTAATAGTTCTGGACTCTCTTGGGGATAAGGTTGAAGAAATGCATGTTGACCCTCTTGTGGAAAGAGGAGGAGAAATAAATGTGGACCCTATAGGGGTTAGAGGTGATGTAATAGTTCTGGACCCTCTTGAGGATCAGGTTAGAGAAATGCATGTTGATCCCCTTAAGGAAAGAGAAGGAAAAATAAATGTGGACCCTCTAGAGGTTAGAGGTGATGTAATAGTTCTGGACCCTCTTGGGGATAAGGTTGAAGAAATGCATGTTGATCCTCTTGTAGAAAGAGGAGGAGAAATAAATGTGGACCCTATAGGGGTTAGAGGTGATGTAATAGTTCTGGACCCTCTTGGGGATAAGGTTGAAGAAATGAATGCTGATCCTCTTGTAGAAAGAGGAGGAGAAATAAATGTGGACCCTATAGGGGTTAGAGGTGATGTAATAGTTCTGGACCCTCTTGGGGATAAAGTTGGAGAAATGCATGTTGACCCTCTTGTGGAAAGAGGAGAAACAGATGTGGATCCTACTTGTTCAAAGTTAACAAAACTTCTTAGTCGTCCTAAAGGTAGACACAAAAAAAGGAGACACATGGACCCTGTAAAAGTAAGTCTGAATGGTATAACCTCTTTCTCCCCAGAGTCATTAAGGATAGTTCATCATAGGGAATGTAAAAGAGAAATTGTTATTAGCCTTATTGACGAAAGAAAAGAAATAATTGTGAGTCCTCTTGAGGATAGAGTTGGAAAAATGCATGTTGTCCATCTTGAGAAAAGAGGAGAAATAAATGTTGACCCTCTTGAGGAAAGAGGTGGAGAAATAAATGTCCTACCCTCTTGGAGGTTGGGTAGACACAAAAGAAGAAGAAATGTGGACCCTGAAAAAGTAAGACTGAATGGTGTAAATGCTCTCTCTACGGATTTTAGAAGAATATTTCCTCATAAGGAATGTAAAAGAGAAATAGTTGTGGGCCCTCATGTGGATGCGTCTTTAGAAACAAATGTGGACCCCCTTGGGGAAAGGTTTGGACAAATGCAAGTTGATCATCTTGGGAGTAAAGATGTTGAAATAGATGTGGATCCTCTTGGAGAATGTGAAGTGGAAATTAATATGAATCCTCTTAAAGGAAGTGATTATGGAACAAATATTGACCCACTGGGCGATTATGGGGAAGGAATTAATGAAGAAAGGACCAGGATAGACCCTCTTGGTAGCTGTAGGGAAAAAAGAAAGAACAAACAAAGAAAACCAATAAACCCTAACAGCAGTAAGGAAGAAGTGCATTCAAATATTTTTGTTAGTATTAAAGAAGAATCGACCTTGAATGATGTCAGTGAAGATGGAGAATATTCCCAACCACACTTTCAAAATGAAGGCATATATTTTGATTCTCCAGAAGATCCCCTAGGTGATGTTGAACAAGAAGTTTAA
- Protein Sequence
- MMIDKDRVSVKEEPLDDVSLGCLNSSNRDASGTGYGHVPVIIKEEVIIPDCLDTSSTLGIARISSFICHYCHKLYQSRHAFKKHIRKLHNKISVKRRLPKKVPNIVTNIQPYIQLTEPVKRGHGRRCTGTPKKKAYRCIKCDFETAHFHSLRLHRMYKHSTERPHKCSQCTYSAVTSSDLKKHIMYKHDNKSYQCQHCPFETSKQHQLMMHLKYKHRNGENTFSFLDLGIPFQEGSEVLIPECRRSHSTKTETFKCDHCDYTALLAEQVRVHSKFKHSIVIPHRCLMCDYSSENGSELKKHILAEHESEKPLTCPYCDYSCRSSLGLKSHITADHMEERPLPCGYCSYRTTSKSSLRKHILARHSNDKPYACHHCPYRTVSSSALKRHTLDMHSTDKPYSCPECTYTCVRPNRMKWHLASQHSSDKPFPCPHCQYRTLTKSKLKLHMMHRHTNVRPHQCPFCEYKSVTKEQVKLHISRSHTKERPYSCSHCSHASISKSELEKHILSKHSVDRPYACSKCSYRTACEYNLKKHIKQLHNQPYPCLQCTFSAKTNELLEKHLSSKHMNRFYNCPFCDYSARTKPSLNRHFRVKHNDMVLACDFCNYKTNRSCYLDKHLKRKHSGKLSKEVCLDTLVNDRLEPVQLPIKGVNKISVGESKKETYLDSLKLSFKEIIDDYTKGSLEKITVPSVLNRTSSLQDSDIKISMEPLGQNGEGSGMDPLQKSENKVTMDPLGVNIEGFKGSIDLTLRDLTKPTVKPVKITEKSNQSVYEDKQEVCLDPSFCNDEIIFIGPNDGECNQNEVVQNELNDPRLAKIYDEKHFKCPHCSYRTKRRADLRKHVRRIHTVDEFLHFETQYKGLRRVGLNIQNLVEKSKHKIIEDSVRESVNGIHKSPINSRQKEIFTHPVNDEIMSKGSEGKCQEKNIQYVFIQNQLHNSSSAKIPDYRLKCPHCWYGTNRSYDFKRHVRRMHAVQESLQLNAQNKSWKIRQDAQDFQKEVKDSQVPRIANQNVGLGNPGFKTPVDRPFSCTQCDYSTSLKDCLRKHMTRKHGLPCEHCSYVAVREAQLEKHFLYKHTNLMTFICPHCDYRSFTSWTLKRHIKTVHFNNTIYLCPHCDYNTTRSSDFTRHVSRKHPDAENGDGESSDHKETGDESFIHLVGKGAINLHDYGNEKRINHTEGDKSCKECIARDPFAETEPDRIYLEPHAESRERICLDPLGEREAIVPIDPLRGRGSPVPVDPLCESRKGKCLDPLQDQKCAEPIDPLHEIKGRTNTNSPSKIGGGILVDPTYSKLKELLRCPKDRHEKRVCIDPVNVRLNSINALYTDSLSLVCHGEYKEEVDVIPFEEREEISMDPLDDMVGEIHVDPLEERGGEINVDPLEVRDDVIVLDSLGDKVEEMHVDPLVERGGEINVDPIGVRGDVIVLDPLEDQVREMHVDPLKEREGKINVDPLEVRGDVIVLDPLGDKVEEMHVDPLVERGGEINVDPIGVRGDVIVLDPLGDKVEEMNADPLVERGGEINVDPIGVRGDVIVLDPLGDKVGEMHVDPLVERGETDVDPTCSKLTKLLSRPKGRHKKRRHMDPVKVSLNGITSFSPESLRIVHHRECKREIVISLIDERKEIIVSPLEDRVGKMHVVHLEKRGEINVDPLEERGGEINVLPSWRLGRHKRRRNVDPEKVRLNGVNALSTDFRRIFPHKECKREIVVGPHVDASLETNVDPLGERFGQMQVDHLGSKDVEIDVDPLGECEVEINMNPLKGSDYGTNIDPLGDYGEGINEERTRIDPLGSCREKRKNKQRKPINPNSSKEEVHSNIFVSIKEESTLNDVSEDGEYSQPHFQNEGIYFDSPEDPLGDVEQEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -