Rped015460.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000006:79439099-79441933[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.024 1.4 9.6 0.3 2 22 397 417 396 418 0.89 2 17 0.034 2 9.2 0.3 1 23 424 446 424 446 0.96 3 17 0.091 5.3 7.8 1.6 1 23 451 474 451 474 0.95 4 17 0.055 3.2 8.5 1.6 1 23 474 496 474 496 0.98 5 17 6.3e-05 0.0037 17.7 3.5 1 23 529 551 529 551 0.96 6 17 0.0044 0.26 11.9 3.1 1 23 560 583 560 583 0.95 7 17 0.19 11 6.8 0.2 1 21 593 613 593 616 0.82 8 17 0.25 14 6.4 8.6 1 23 637 659 637 659 0.97 9 17 0.00033 0.019 15.5 1.7 1 23 665 687 665 687 0.99 10 17 0.0037 0.21 12.2 1.1 1 23 706 728 706 728 0.95 11 17 6.2 3.6e+02 2.0 1.8 1 19 734 752 734 754 0.85 12 17 1.6e-06 9.1e-05 22.8 2.5 1 23 772 794 772 794 0.99 13 17 2.2e-06 0.00013 22.3 0.3 1 23 800 822 800 822 0.97 14 17 0.0059 0.34 11.5 0.6 1 23 828 850 828 850 0.98 15 17 0.001 0.058 14.0 1.9 1 23 856 878 856 878 0.98 16 17 1.1e-05 0.00064 20.1 1.3 1 23 884 906 884 906 0.99 17 17 0.015 0.85 10.3 2.8 3 23 914 935 913 935 0.89
Sequence Information
- Coding Sequence
- ATGAAACTGCAAGTGGTAACACCTTCAGGTCAGCTAGCTGAAGTTTTCTTTAAGCATGATGAGCCACTCCGGGATTTATCAAAGCGTGTAGAAGAGTTAGGAGTGTCTTTGGATCTCGACGGCATATATTCAACTGAAAGCATCACCGTTTTGGACTACCTTTCTGTGAATGATTACATACCAATCAAGCATGTTCAGTGTTCTGTCCCGAGGTGTGGTAACACGAAAATTGTTAACCAGGATAAAGTGTTTTTTAGTTTTCCCGAGGAACCCATACGCTGTCATCAATGGGTTCTATATTGCCAAAAATTTGAAGAGGATCCAGGGAAGAAAAGGTTAACACTCACAAAAAATTCCTCTATATGTAGCGATCATTTTTCACCAGAACAATTTGTGAAAAATACAAACACGCTTTTAAAAAGAACTGCAGTACCTTCCCTTCCTGAATCTTACTGGAAACCGACTCCTGCAGAAAACGCCAATGATCAAGAAATGTTCACTCTTCAAAAATTGTGTTTTGATATGGAAAGTGATCAAGATAGCTGTATAATATTATGTAGGCTTTGTGCTAAACCATGCTCAGACTTTTGCTATATTTTTGATGAAGTTGGCCGTAGCTTGAAGTTATCTGACAAAATAAATTTATGTTTTCCATTTGAAGTTAAAATTTCCGACCCTCTACCTAAACAAATCTGTAGATCGTGTCTAGATAAGCTTGATGCACTTTTTCAATTGGCTGATCTAAGTAGCATGTCTCAGCATAAATTGAGGGATTTATTGAGCACTGGCAATTATGGTTCTAGCTCTTTAGATATGTGTCCCTTATGTGAAGTTGGAGAAATGATTGAAGTAGTTCCAGGTAACAGTGAAAATGACTATTCAGGTAAATTACTTCCTCTTGAAAACAACACTCAATTGAACATGAATAATATCAAAATTGAACCAGAGTCAGAATGTTCTGATGAAATGAGTAATGACATTCTATTAGAATACAAGGGGAGTTATGATAATGAATCTGTTACAAGTGACTCATTGCAGCTCCAAAATCTTGATCATTTTGAATTTGATAATGCTACTACCATAGAATCAGTAATGCCAGAAAAAGTTTTCCCTTCAGTTGACAAATTGGATACTGCGAATGCCGAGCCAAGTATGAATTTGTTCCAGTCAGTAGAGTCTGCTTACATGTCATGCCGAATATGTGGTTCTGAGTTTAAAGAAAAAGAGGAATTAATAAAGCATTCATACGACCATTCGTGTCAACTATTTTTTAAGTGTGCTGTTTGTATAGCATTCTTCACATCGAAAAGTGATTTTGAGGAACACCTTTCTGCCCACAAACATGAAAAACATTTTTGTAAGAATTGTCAGAAGCTGTATAGTTCAGTTTCTGAAATCAATGAACATTTATGTAAGCCACACACTTGCCCAGTTTGTTTCATGATTCTAGCTAATGAATACTGTTTTTCAAGTCATATGAAAGTTCATCAAGATTCTTTGTATTGTGGAATTTGTTGTTTGGTTTTCGATTCGGAAATAAAAATGCAGAAACACTTTTTATATGTTCATAATTCTAGAAAGAATCATTGTTGTGAAGAATGTGGTAAAATTTTTAAATCAGATGCTTCTTTGAAATACCATCAGCGTATCCATCAGGAAAGTGAAAGCGCTAAATCTTTTACTTGTGAATGGTGTGGAAAGCATTTTCTTCGCCGAACTTATTTAATAAATCACTTGTATTCTTTTCATCCCTACTTATCTATTAAAGTCAAATGCTTTACTTGTAAAATTTGTAGTGAAGCTTTTCCCAACACTATAACCGCTTTTGCCCATTTTGAAAACGTCCATAATTCTGATAATTTAAACGACTCAGCTTTGTGCGTCGAAGTAAGTGAAGTACAAAAAATATTTATTTGTGAATATTGTCATCGAAGCTATTCTAGTGAATATTCTCTTCATTGCCATCGTAAAATGCATCCGACAGAATTCCCTTACGAATGTAAACACTGTAACGCTCCTTTTAAATTAATGGATGATTTTCGAGTTCATCAAATGACACACTCAGAGAATAATATTTTAACTGAATACAAATCAGACTTCAAAATTGCAAAATCCTACTTATGCGAATATTGTGAAAGATGCTTTATTGACGATAGCAAGTACATAGAACATTTGAGCATTCATTATGGGCCTAAGCCCTACCAGTGTTATCATTGCTCGAGCAAGTTCGCTTCATTTACTGATGCAGTTCAGCACAGGTTCGATTTCAAGTTATCTGCAAAATCAGCAGAAATGTATGACATAGGACGTCCATATCAGTGCCACTTTTGCAATAAATCATTTTCGATTGAAGACGCATTGACGAAACACATCAGAATGCACACTGGAGAAAAACCGTTTATTTGCGACCAATGTGGGAAAGGTTTCTCTCAAAGTTCGGGCCTCTATACCCACCTGAAAGTCCACTCGTCGGATAGACCTTATTCGTGCTCTCTCTGTCCGAGGACATTCAAGATAAAAGGGGACAGAGATGTTCATGTGAGGAAGCACTCGGGAGAGCGGCCGTACCCGTGTGAGTTCTGCGGGAAAGCCTTTATGACCCAGCATGTGTATAGCCAGCACCGCAAGATTCATACAGGGGAACGGCCTTATCGCTGTGATGTATGTGGCACTGCTTTCCGCCGCTCTCATGTCCTTACAGTCCACAAGAGAATACACACAGGCGAGAAACCAAACATGTGCATGTATTGTGGCAAAAGGTATCGCCAGAAGGGAGACATGCTCAAGCACTGTCGTCTCCAACATGGAATGCTAACTACCAAGCAAACATTATAG
- Protein Sequence
- MKLQVVTPSGQLAEVFFKHDEPLRDLSKRVEELGVSLDLDGIYSTESITVLDYLSVNDYIPIKHVQCSVPRCGNTKIVNQDKVFFSFPEEPIRCHQWVLYCQKFEEDPGKKRLTLTKNSSICSDHFSPEQFVKNTNTLLKRTAVPSLPESYWKPTPAENANDQEMFTLQKLCFDMESDQDSCIILCRLCAKPCSDFCYIFDEVGRSLKLSDKINLCFPFEVKISDPLPKQICRSCLDKLDALFQLADLSSMSQHKLRDLLSTGNYGSSSLDMCPLCEVGEMIEVVPGNSENDYSGKLLPLENNTQLNMNNIKIEPESECSDEMSNDILLEYKGSYDNESVTSDSLQLQNLDHFEFDNATTIESVMPEKVFPSVDKLDTANAEPSMNLFQSVESAYMSCRICGSEFKEKEELIKHSYDHSCQLFFKCAVCIAFFTSKSDFEEHLSAHKHEKHFCKNCQKLYSSVSEINEHLCKPHTCPVCFMILANEYCFSSHMKVHQDSLYCGICCLVFDSEIKMQKHFLYVHNSRKNHCCEECGKIFKSDASLKYHQRIHQESESAKSFTCEWCGKHFLRRTYLINHLYSFHPYLSIKVKCFTCKICSEAFPNTITAFAHFENVHNSDNLNDSALCVEVSEVQKIFICEYCHRSYSSEYSLHCHRKMHPTEFPYECKHCNAPFKLMDDFRVHQMTHSENNILTEYKSDFKIAKSYLCEYCERCFIDDSKYIEHLSIHYGPKPYQCYHCSSKFASFTDAVQHRFDFKLSAKSAEMYDIGRPYQCHFCNKSFSIEDALTKHIRMHTGEKPFICDQCGKGFSQSSGLYTHLKVHSSDRPYSCSLCPRTFKIKGDRDVHVRKHSGERPYPCEFCGKAFMTQHVYSQHRKIHTGERPYRCDVCGTAFRRSHVLTVHKRIHTGEKPNMCMYCGKRYRQKGDMLKHCRLQHGMLTTKQTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -