Rped009493.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- ZNF341
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000004:70194243-70214049[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1e-05 0.0006 20.2 1.4 2 23 238 259 237 259 0.96 2 11 3.4e-07 2e-05 24.9 0.2 1 23 265 287 265 287 0.99 3 11 0.0071 0.41 11.3 0.9 1 23 317 339 317 339 0.98 4 11 0.026 1.5 9.5 0.6 1 23 345 369 345 369 0.94 5 11 0.00045 0.026 15.1 2.2 1 23 375 397 375 397 0.96 6 11 0.032 1.9 9.2 0.3 2 23 408 431 407 431 0.90 7 11 3.8e-07 2.2e-05 24.7 0.6 1 23 433 455 433 455 0.98 8 11 1.9e-05 0.0011 19.4 0.8 1 23 461 483 461 483 0.96 9 11 0.00014 0.0084 16.6 1.0 1 23 489 511 489 511 0.97 10 11 1.3e-05 0.00074 19.9 2.6 1 23 517 542 517 542 0.98 11 11 0.049 2.9 8.6 2.3 1 19 548 566 548 569 0.92
Sequence Information
- Coding Sequence
- ATGGCTCAAATTTTTTACACAACAGTTCAAGGTTCACCTTCTTCCCAACAGCCTGTTGAAGTTGACTTGGAACAGCTCTTGACACCTGCAGTTGTACTTAAAACAGATGTTTCTCCAGACAGTATTCTTGTGGAAGATGGTGATACGTTCCAATGTGGGAAATGTCTGAATCAGTTTTCTTTTATGGACTTTATATTGCATAAGAAAAATGTTTGCCAAGGTGTTTCTATAAGTCTTAATGATGAGAATACTGAAGAAATTCTTTCTAACCCAATTACAATACCAGAAGAGAATGTTAATGTTACTGAAGACAATAATAATCAAGAAATATTAGTTGACTTGCAAAAATATGGTGATATTTTTTCATTTAAAGTGGAAGAAGCAGCGAATCAAGCAGCACTGTTGGGAGAGCCATTCCAGGATTTGGGCACATTTGAAGGGGCTACAATAAAAATAATTGAAAATGATGATACTATGGAAATTAGTCCTATTATTGGGAATAATTACTTGCTTTCACATAACAATAAAGACACTGGAAATGAAGTCTTTCTTTCTGAAGGAGAAAATGTGGAAAGGTTGGACATACCTCTTATTTCTTCAACTGTTGATGAACTTGGGTTGGAAGCAGAAGATAAGTCTGAACCTAGGTCTGAGTCGGATGACAATGAAAAAGATTCAGAATTAGCATTTGATTCTAATCTGAACCAACTGAAATGTTACGCTTGTGGAAAAGAATTCAGGAAAAACTTTGATCTTCAACAGCATATGAGATCGCATACTGGTGAAAGGCCTTTTCAGTGTGTAGTATGTGGAAGGGCTTTTGCTCAGAAATCGAATGTCATGAAACACATGGCTACTCACAAGGTTTGGCCAAAAAAGACTACTACTTTACCTCACATCCCTTTAAAACTTAATGGAAAGGCTGGAAGACTGCTTATTGAAAAAATGTTTGTATGCCAATACTGTCCTTCAATTTTTGAAAGTTATTTAGACTTAAAATCACATCGATCAAAGCACATTGGACAAAAGGTGTTCAAGTGTGTCCAAAAATCCTGCCCTGAAACATTCAAAGAATTGGATGAATTTCTAGAACATACTCAAACACATACTGACATGGCTTCGTATGAATGTCATATATGCCATCAGGAATTTAATTCTCTTGATGATTTAGGCCAACACCAAATATTTCATGATGGTTCAAAAACTGCACCTAAACAAGTGTCTTGTGAGCAATGTAGGGCTAAGTTCATGAGCACTGAATCTTTGGAAAAACATCTGGCAACTGATAGTCATAATTATCCTTGTCCTACCTGTGATAAGGTTTTCTCTTCGGAAAGATTTTTAAGGCGACATATAAGCACACATTCACCTATATTAAAATATGTTTGCCCAGTATGCCAAAAACCCTTCAGGACTGAACACTATTTGAACATGCATAGGGTAATTCACAGCAAAGATAAACCATATACCTGTGAGGTTTGTTCTGCATCTTTCAATCGAAGAGATAAACTCTCAAGACATAATCTTTCTCATGAAAACGCAAAGCGTTATAAATGTCCTTTCACAACAAAGTGCAATAAAGAATTTAACCGGAAAGATAAACTAAAGCAACATGTTTTAACCCACTCTGCCTGGAAAAAATATTGCTGTAAATTTTGCTATAAGTCATTTAGCACAACAGCTTTAGTTGAAAATCATGAATTTGTGTGTACTGCTGGTCCGAACACTCAAGGGAATAATTCCAATGAAATTGGTACTAATCCTGAGTTAATGATTACTCAGAAAGGTAATATTAACCTTTTCGAGGATACTATTGTCCTCAAGCAGTCATACCCTGTAGATCTCACTGCTCAGTCATCTGAAACAAGAAACTCTTTTTAA
- Protein Sequence
- MAQIFYTTVQGSPSSQQPVEVDLEQLLTPAVVLKTDVSPDSILVEDGDTFQCGKCLNQFSFMDFILHKKNVCQGVSISLNDENTEEILSNPITIPEENVNVTEDNNNQEILVDLQKYGDIFSFKVEEAANQAALLGEPFQDLGTFEGATIKIIENDDTMEISPIIGNNYLLSHNNKDTGNEVFLSEGENVERLDIPLISSTVDELGLEAEDKSEPRSESDDNEKDSELAFDSNLNQLKCYACGKEFRKNFDLQQHMRSHTGERPFQCVVCGRAFAQKSNVMKHMATHKVWPKKTTTLPHIPLKLNGKAGRLLIEKMFVCQYCPSIFESYLDLKSHRSKHIGQKVFKCVQKSCPETFKELDEFLEHTQTHTDMASYECHICHQEFNSLDDLGQHQIFHDGSKTAPKQVSCEQCRAKFMSTESLEKHLATDSHNYPCPTCDKVFSSERFLRRHISTHSPILKYVCPVCQKPFRTEHYLNMHRVIHSKDKPYTCEVCSASFNRRDKLSRHNLSHENAKRYKCPFTTKCNKEFNRKDKLKQHVLTHSAWKKYCCKFCYKSFSTTALVENHEFVCTAGPNTQGNNSNEIGTNPELMITQKGNINLFEDTIVLKQSYPVDLTAQSSETRNSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -