Rped007045.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000003:134042204-134058453[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.33 19 6.0 1.5 2 17 133 148 132 149 0.91 2 15 1.6 96 3.8 2.4 1 23 206 229 206 229 0.93 3 15 0.00018 0.01 16.3 1.6 1 23 235 258 235 258 0.95 4 15 0.001 0.061 13.9 1.3 1 23 264 287 264 287 0.95 5 15 0.001 0.059 13.9 2.1 1 23 293 316 293 316 0.94 6 15 3e-05 0.0018 18.7 1.6 1 23 322 345 322 345 0.97 7 15 0.00086 0.05 14.2 0.6 1 23 351 374 351 374 0.97 8 15 0.00098 0.057 14.0 0.9 3 23 382 403 381 403 0.96 9 15 2.3e-05 0.0013 19.1 0.7 1 23 409 432 409 432 0.97 10 15 4e-06 0.00023 21.5 1.4 1 23 438 461 438 461 0.95 11 15 0.0035 0.2 12.3 2.1 1 23 467 490 467 490 0.95 12 15 0.002 0.12 13.0 7.0 1 23 496 519 496 519 0.96 13 15 0.13 7.4 7.3 5.8 1 23 525 548 525 548 0.95 14 15 0.001 0.061 13.9 4.9 1 23 554 577 554 577 0.93 15 15 5.9e-05 0.0034 17.8 0.6 1 23 583 606 583 606 0.94
Sequence Information
- Coding Sequence
- ATGGCGTTACTCAATGTACTGTTAGTTATCAATATTACAGACTTCCTTGGATTAGGCGTGGGAGAAGGCAATATGGATGTGCACATTAAAGAAGAAAATGCTATTGATGTGAAAAATCTCTCATTGCCTCTGGGTTCTGTAGCTGCCAATATGACTGTATCTGTCAAAAAAGAAGAGCTCTCTGGGGATGATTGCCTCCAGTCAACTTCAGGCATTGGAGATTCATCCTTATTGATCAAAAAGGAACCTCATTTAGAACTTCCAACAGAATTTCAGGTACAGAAAGGTAAGCCTATTTATAAGACTATTCAATTAGTCTATAGGATGTTCATCAGTATTGGGAAAGTAATCATGTTATGTGTTCTGGGATATGTAGATGAAAAGAAGACAACGTGCATATGCCATCATTGTCAGAGGGCCTATGACTCCTTTAGTTCTCTCAAACTGTGTGTAAAACGATGCTTTAAGCTTGCCAGAACAATGTCACCATTAGACAAGACAATATTAGCAATAGCAGAGTTTGGAACCACAGAATCAGATAATTGCTCCAAGAATTCTGAAGAATTAATTACTTCAAGGGAAACTTCAGGAGCTCTCATAGTAGCTCAAAAGCTCTACTCCTGCCAGGAATGTAGTTATATGGCTAATTATAAAAATTCTTTAAAATGCCACATAATGGCTAAGCACACTGATGAAAGACCTTACACTTGTACATTCTGTGATTATACTACTGCTGATTATAGCAGTTTAAAGAGGCACACTATGGCTAAGCACACAAAGGAAAAACCTTATGCCTGCCCTCATTGTAGTTATGGCACTGTTCATTCAGTCCAATTAAAGCAGCACATCATGGCTAAGCACACACAGGAGAAACCTCATTCGTGTAATTATTGCGGCTATAGTGCTGTTCAGTCAAGCCACATAAAGCAGCACATTATGGCTAAACACACACAGGAGAAACCTTATTCTTGTACTTATTGCAATTATAGTGCTGTTCGATCCACCCAACTAAAGCGGCACATTATGTCAAAGCACACTAAAGAGAAACCATATTCTTGTACTTATTGTGATTATAGCGCCGTTCAATACATTCAACTAAAGATGCACATTATGTCAAAGCACACACTGGATAAACCTCGAGCTTGTACGTATTGTGATTATAGTGCTGTCGACTCTACCTGCTTAAAGAGACACATTATGATTAAGCACACTAAAGTGAAGCCATATGTGTGTCCTCATTGTGATTACAGTACTGTGCAATCTACTCTCCTAAATGAGCACATTATGTCTAAGCATACTCTTCATAAACCTCACACCTGTCCTTACTGTGATTACAGTTCTGTTCGTTCCAGCAACTTAAAGCAGCATATAATGGCTAAGCACACACTTGAGAAACCTCACGTGTGTCTTCATTGTGATTACAGTGCTAATGACTCTAGGAGTTTAAAGTTGCACATGATGGCTAAACATACTCAAGAGAAACCTCACACATGCCCCCATTGTGATTATAGTACTGTCCATTCTGTCCAATTAAAGCATCATGTTATGTCTAAGCATACGCAGGAGAAACCTCACACCTGCCCTTGTTGCGATTATAGTACAGTTAGTTCCTGTGATTTAAGGAAGCACATAAAGGCTAGGCACACACATGACAAAACACATGCTTGCCCTCATTGTGATTATAGTACTGTTCATTCTGTCCAATTAAAGCACCATATCATGGCTAAGCACACTCTTCACAAACCTCACTCCTGTCCTTCTTGTGATTATAGTACTGTTCGCTCTTCCAGTTTAAAGGCACACATAATGGCTAGGCACTCACAGTAG
- Protein Sequence
- MALLNVLLVINITDFLGLGVGEGNMDVHIKEENAIDVKNLSLPLGSVAANMTVSVKKEELSGDDCLQSTSGIGDSSLLIKKEPHLELPTEFQVQKGKPIYKTIQLVYRMFISIGKVIMLCVLGYVDEKKTTCICHHCQRAYDSFSSLKLCVKRCFKLARTMSPLDKTILAIAEFGTTESDNCSKNSEELITSRETSGALIVAQKLYSCQECSYMANYKNSLKCHIMAKHTDERPYTCTFCDYTTADYSSLKRHTMAKHTKEKPYACPHCSYGTVHSVQLKQHIMAKHTQEKPHSCNYCGYSAVQSSHIKQHIMAKHTQEKPYSCTYCNYSAVRSTQLKRHIMSKHTKEKPYSCTYCDYSAVQYIQLKMHIMSKHTLDKPRACTYCDYSAVDSTCLKRHIMIKHTKVKPYVCPHCDYSTVQSTLLNEHIMSKHTLHKPHTCPYCDYSSVRSSNLKQHIMAKHTLEKPHVCLHCDYSANDSRSLKLHMMAKHTQEKPHTCPHCDYSTVHSVQLKHHVMSKHTQEKPHTCPCCDYSTVSSCDLRKHIKARHTHDKTHACPHCDYSTVHSVQLKHHIMAKHTLHKPHSCPSCDYSTVRSSSLKAHIMARHSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -