Rped013935.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:153134180-153138619[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0016 0.095 13.3 0.5 1 23 74 97 74 97 0.96 2 15 0.0001 0.0059 17.1 0.8 2 23 129 151 128 151 0.94 3 15 0.007 0.41 11.3 0.2 1 23 157 180 157 180 0.97 4 15 0.0003 0.017 15.6 2.9 1 23 186 209 186 209 0.95 5 15 0.00017 0.01 16.4 1.3 3 23 217 238 216 238 0.93 6 15 4 2.3e+02 2.6 0.1 1 13 244 256 244 267 0.67 7 15 3.3e-05 0.0019 18.6 4.7 2 23 274 296 273 296 0.96 8 15 0.00014 0.0083 16.6 2.3 1 23 302 325 302 325 0.92 9 15 0.048 2.8 8.7 0.4 2 23 332 354 331 354 0.93 10 15 0.00066 0.038 14.5 0.5 1 23 360 383 360 383 0.95 11 15 0.00037 0.022 15.3 1.4 1 23 389 412 389 412 0.90 12 15 1.6e-05 0.0009 19.7 0.7 2 23 419 441 418 441 0.94 13 15 0.00081 0.047 14.3 2.2 1 23 447 470 447 470 0.96 14 15 0.00017 0.0098 16.4 0.1 2 23 477 499 476 499 0.94 15 15 0.0062 0.36 11.5 2.0 1 23 505 528 505 528 0.96
Sequence Information
- Coding Sequence
- ATGGATTTTACAGGAATCGGAGCCGAATCGTCGCCGATAAAGGAAGAAGCAGCCCTTGACCTACTTCCAATCACTGACGGAAGTTCACTGAGCAATGTTTCATCGTCGAAATCAGTCGTGAGAGGAGCTTCGACATATGCCCACAGATCCTCCGATTCTCAGCAAACCAACACATCTCAAGAAGAAAACGCTTATATAATCTTCGGGCCCGATAGTCAATACAGCTGTTCCCAATGTGGCTATAGCGCAAAGTTCGTATCCTTATTAAAAGACCATATAAAGGAAAATCATTCCAACGCCAAACATCTCTCTTCTTGTCAATCTAATTACTCCACGACAATCACTGATGAAGTAAATCTCAAAAATTCGAGTGATAAATCTTCCTCTTGCCCCTATTGTGAGTACTGCACTGTCGACTCTGACAATCTAAATAGTCACATAATGGAAAAGCATAGCAGTGACAAACCTTTCGTCTGCCCTTACTGTGACTACAATGCTATCAGCATGAGTACTATAAGGAGTCACATATTGACCAAGCATACGAGCGTTAAGCCCTTCTCGTGTCAACACTGTGAGTACAGCACTGTCAACTCCGGTCATCTGAGGAATCACATAATGGCAAAGCACAGCAATGATAAGCCCCTGCTTTGCCCTCACTGTCCATATAGAACTGTCGACTCTAGTAACCTGAAGAGACACACTAGTGCAAAGCATAGCAGTGACAAACCTTACCTCTGCCCTTACTGTGACTACAATGCTGCCACTATGAGTATTATAAGGAGTCACGTACTCAGCAAACACTGTCAGGAAAGGCCGTTGTCTTGTCCTCACTGTGACTACACCACCGCCCACTCTGGCCATTTGAACAAACACATTAAGACTCAGCATACCAGCGATAAGCCATTCCTGTGTTTTCACTGTGATTACAGAACTGTAGACTCTAGCAATCTAAAGAAACACATAATGGCCAAACATTCGAGAGACAGGCCTTTGAAATGTGCTCACTGTGAGTATAGTACTGTCATCTCTGCGAGTCTCAGAAACCACGTAATGGCTAAGCATACGAATAACAAGCCGTATTCTTGTGCTCACTGTGAATACAGTGCTGTCAACAGTGGCACTCTAAAGAGACACATAATGGCAAGGCATTCGAGTGACAAACCTTTCCTCTGCCTTCACTGTGACTACAGCACTGTCAACTCCTCCAATCTGAAGAATCACGTACTGGCCAAGCATACCGTCGACAGGCCTTTGTCTTGCCCACACTGTGACTATAGCACTGTCAACTCTGGCAACCTTAAGAACCACATAAATGCTAAGCATACGGATGATAAACCTTTTCACTGCCCTCACTGTAAGTACAGCATTGTAGGCTCGGGCAATTTAAAGAAGCACATAGCATCCAAGCATTCTGCATGTAAACCTTTGCCTTGCCCTTACTGCCCGTACAGTTCCATTTATTCCAGTACACTAAAGAACCACATAAATGCTAAGCATACGAATCATAAACCTTTTCACTGTCCTCACTGTGAGTTCAAGGCTGCAGGCTTGAGCAATTTAAAGAAGCACATAGCATCCAAGCATTCTGCAAGTAAACCTTTGCCTTGCCCTTAA
- Protein Sequence
- MDFTGIGAESSPIKEEAALDLLPITDGSSLSNVSSSKSVVRGASTYAHRSSDSQQTNTSQEENAYIIFGPDSQYSCSQCGYSAKFVSLLKDHIKENHSNAKHLSSCQSNYSTTITDEVNLKNSSDKSSSCPYCEYCTVDSDNLNSHIMEKHSSDKPFVCPYCDYNAISMSTIRSHILTKHTSVKPFSCQHCEYSTVNSGHLRNHIMAKHSNDKPLLCPHCPYRTVDSSNLKRHTSAKHSSDKPYLCPYCDYNAATMSIIRSHVLSKHCQERPLSCPHCDYTTAHSGHLNKHIKTQHTSDKPFLCFHCDYRTVDSSNLKKHIMAKHSRDRPLKCAHCEYSTVISASLRNHVMAKHTNNKPYSCAHCEYSAVNSGTLKRHIMARHSSDKPFLCLHCDYSTVNSSNLKNHVLAKHTVDRPLSCPHCDYSTVNSGNLKNHINAKHTDDKPFHCPHCKYSIVGSGNLKKHIASKHSACKPLPCPYCPYSSIYSSTLKNHINAKHTNHKPFHCPHCEFKAAGLSNLKKHIASKHSASKPLPCP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -