Basic Information

Insect: Riptortus pedestris
Gene Symbol: -
Assembly: GCA_019009955.1
Location: GWHBAZH00000003:120489802-120498804[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00036 0.021 15.4 6.4 1 23 137 159 137 159 0.98

2 18 0.0038 0.22 12.1 1.4 1 23 165 187 165 187 0.97

3 18 0.0029 0.17 12.5 0.1 1 23 193 215 193 215 0.98

4 18 0.001 0.061 13.9 2.0 1 23 221 243 221 243 0.98

5 18 6.1e-05 0.0035 17.8 2.0 1 23 249 271 249 271 0.98

6 18 0.0012 0.069 13.7 2.3 1 23 277 299 277 299 0.97

7 18 0.024 1.4 9.6 1.6 1 23 305 327 305 327 0.98

8 18 2.5e-05 0.0014 19.0 1.2 1 23 333 355 333 355 0.98

9 18 0.014 0.84 10.3 4.2 2 23 361 382 360 382 0.97

10 18 0.00077 0.045 14.3 0.1 1 23 388 410 388 410 0.96

11 18 6.6e-05 0.0038 17.7 3.0 1 23 416 438 416 438 0.98

12 18 0.0028 0.16 12.6 0.3 2 20 445 463 444 466 0.90

13 18 0.00015 0.0084 16.6 3.1 1 23 472 494 472 494 0.97

14 18 0.011 0.62 10.7 4.0 1 23 500 522 500 522 0.98

15 18 1.7e-05 0.00096 19.6 1.0 1 23 528 550 528 550 0.99

16 18 3.1e-05 0.0018 18.7 3.4 1 23 556 578 556 578 0.99

17 18 4 2.3e+02 2.6 1.1 1 23 586 606 586 606 0.75

18 18 0.074 4.3 8.1 2.5 2 23 612 633 611 633 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00036	0.021	15.4	6.4	1	23	137	159	137	159	0.98
2	18	0.0038	0.22	12.1	1.4	1	23	165	187	165	187	0.97
3	18	0.0029	0.17	12.5	0.1	1	23	193	215	193	215	0.98
4	18	0.001	0.061	13.9	2.0	1	23	221	243	221	243	0.98
5	18	6.1e-05	0.0035	17.8	2.0	1	23	249	271	249	271	0.98
6	18	0.0012	0.069	13.7	2.3	1	23	277	299	277	299	0.97
7	18	0.024	1.4	9.6	1.6	1	23	305	327	305	327	0.98
8	18	2.5e-05	0.0014	19.0	1.2	1	23	333	355	333	355	0.98
9	18	0.014	0.84	10.3	4.2	2	23	361	382	360	382	0.97
10	18	0.00077	0.045	14.3	0.1	1	23	388	410	388	410	0.96
11	18	6.6e-05	0.0038	17.7	3.0	1	23	416	438	416	438	0.98
12	18	0.0028	0.16	12.6	0.3	2	20	445	463	444	466	0.90
13	18	0.00015	0.0084	16.6	3.1	1	23	472	494	472	494	0.97
14	18	0.011	0.62	10.7	4.0	1	23	500	522	500	522	0.98
15	18	1.7e-05	0.00096	19.6	1.0	1	23	528	550	528	550	0.99
16	18	3.1e-05	0.0018	18.7	3.4	1	23	556	578	556	578	0.99
17	18	4	2.3e+02	2.6	1.1	1	23	586	606	586	606	0.75
18	18	0.074	4.3	8.1	2.5	2	23	612	633	611	633	0.97

Sequence Information

Coding Sequence: ATGGCCGCCGCTCAAGTTCTAAAAATGGACTCTGGTTTGGAGATGCAAGGAAATGGTGTAAAGACTGAACCACCAGACCAAGATGTTTCTGTATATGGAGACCTTCCAAAAAAATTAAATGGCAGTCCAATGCTATTAGAAGATAAACAACCAGTAGTAAAGAAGGAGGAGTTGTACTTGGAGAATGAAGAAAAAGAAATATCAACAACAAATGGTGGTGATCCCATAGACATGAGAGTCAAAAACGAGCTAAATGAAGACCTATGCAAGCCTTCATTAGATTTAGGAATTCCTAAAAAAGAAAATGGTCGCTGGATCCATAAGACTGTGAAGTGTCCTTATTGTACGTACTGGGCAGCTCCTTGCACAATGAAGATTCATATCCGGAAGCATACTGGGGAGCGCCCATACATATGCTATCACTGCCAATACAAGTGCACTAACCTCTCTAGCCTTAGGATGCACATTCGCACTCACAGTGGAGTTAAACCCTTCAAGTGTAGAGACTGTAAATTTGCCACGCGCTATTCAGCCTCACTGAGGATGCATCAGGCTCAACACACTGGCGACAAGCCATATCCATGTCCTCATTGTCCGTACAAAGCAGCTATTCCTGGGACACTCAAGATTCACCTCAAGTCACACAGTGAGCAAAAGTCTTACAGTTGTAATTTGTGTTCTTACCAAGCAAAGTATTTTTCGAGTTTAAAGACACATATGCGGGTCCATAGTGGTGAAAAACCTCACAAGTGCAATATTTGTGGTTACCAAACAGCATATCGAAGTAGTTTAAGATCGCATTTAAGAGGGCATTCAGGTGAGCGGCCTTATGCATGCAATACCTGCCACTATAACACAGCTCAATCGAGTTCTTTAAAGCAACACAAATTGATACATGTAGGAGATAAGTGCTTTAAATGCGAATTGTGTGATTTCCGGGCAATACGTACAACACACATTAAAGTTCACATGTTATCTCACACCAAAGAAAAGAGATTTTCGTGCCCACACTGCCCATATCGTACACCATACTCTAGCAGTCTTAAAATACACATTTCAACTCATGGAGAGAAAAATATCAAATGTTCATTTTGCGATTTTCGGACTCGCCATAGGCAAGGTTTAAGGCGCCACTCTCGAATTCACACAGGTGAAAAACCGTTTGCCTGTTCTCAATGTGACTACAGATCTGCTTCAAAGCCTAATTTAAAAATTCATATTTTGGGACACGAGGGAGTTAAACCGTTTAAATGTGAATATTGCACATTTGAGACGGCCAGGAACAGCCATCTCAAAAGACATCTGCTTATACATAGCAAAGCGACTGTCCTTCCTTGTCCATTGTGTAATTTTACTACAACTCAGATGTCCAATTTGAAAGCACATACTTGGACCCATATGAAGCAAAAGCCATATTCGTGTGATGAGTGTGATTACACCTGTTCGCGTAAGGACAGCCTCCTTGTTCATAAAACAAAGCACGATGGGACCAAACCGTTTGTTTGCCCTATGTGTACTCACCGCACTGCTGACTACCGATGTTTGCGTATACACCTTAAAACCCATTCAGAGGTTCGGCCCTACAAATGCACTGATTGTTCTTACGCTGCCAAGAGACCAGGACTTCTGAAGAGGCACTACCGACGCCATACTGGCGAGAAACCGTACCAATGTACCAAGTGCCCATTCAGAACCAACAGGTCGGAGAACCTAAGGAACCACCAGAAGAAGCATGAAAAAGGATACAAGAGCAAACACGAGTGTTCTCTGTGTGGTGGCTCTTATTTTAACCTACAGTTACATTTGATCAGATCTCATGCGGACCAAATTGTAAGATGCTTCCACTGCTCGTACTATGCATGTGATTTATATGCACTTGCTAAGCACATCAAGATGCACATCAAAAGGCCTAGTCAAGATAAAGAATAG
Protein Sequence: MAAAQVLKMDSGLEMQGNGVKTEPPDQDVSVYGDLPKKLNGSPMLLEDKQPVVKKEELYLENEEKEISTTNGGDPIDMRVKNELNEDLCKPSLDLGIPKKENGRWIHKTVKCPYCTYWAAPCTMKIHIRKHTGERPYICYHCQYKCTNLSSLRMHIRTHSGVKPFKCRDCKFATRYSASLRMHQAQHTGDKPYPCPHCPYKAAIPGTLKIHLKSHSEQKSYSCNLCSYQAKYFSSLKTHMRVHSGEKPHKCNICGYQTAYRSSLRSHLRGHSGERPYACNTCHYNTAQSSSLKQHKLIHVGDKCFKCELCDFRAIRTTHIKVHMLSHTKEKRFSCPHCPYRTPYSSSLKIHISTHGEKNIKCSFCDFRTRHRQGLRRHSRIHTGEKPFACSQCDYRSASKPNLKIHILGHEGVKPFKCEYCTFETARNSHLKRHLLIHSKATVLPCPLCNFTTTQMSNLKAHTWTHMKQKPYSCDECDYTCSRKDSLLVHKTKHDGTKPFVCPMCTHRTADYRCLRIHLKTHSEVRPYKCTDCSYAAKRPGLLKRHYRRHTGEKPYQCTKCPFRTNRSENLRNHQKKHEKGYKSKHECSLCGGSYFNLQLHLIRSHADQIVRCFHCSYYACDLYALAKHIKMHIKRPSQDKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -