Rped007512.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000003:166603114-166615863[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0002 0.011 16.2 1.5 3 23 173 193 171 193 0.96 2 12 0.24 14 6.5 0.1 1 23 199 221 199 221 0.94 3 12 0.0066 0.38 11.4 0.2 1 19 227 245 227 247 0.94 4 12 1.7e-06 0.0001 22.7 2.6 1 23 255 277 255 277 0.96 5 12 6.4e-06 0.00037 20.9 5.8 1 23 283 305 283 305 0.98 6 12 0.00023 0.014 15.9 0.0 1 23 311 333 311 333 0.93 7 12 1.4e-05 0.00081 19.8 1.0 1 23 339 361 339 361 0.97 8 12 5.6e-06 0.00032 21.1 0.2 1 23 367 390 367 390 0.95 9 12 0.0005 0.029 14.9 1.1 3 23 458 478 456 478 0.96 10 12 3.1e-07 1.8e-05 25.0 0.9 1 23 484 506 484 506 0.96 11 12 1.2e-05 0.00071 20.0 0.7 2 23 521 542 520 542 0.98 12 12 0.0019 0.11 13.1 6.1 1 23 548 571 548 571 0.97
Sequence Information
- Coding Sequence
- ATGGACTCAATCTTCCAAGTCCCCCAGCACCTCGGCACCACCGAAGAAGTAAACATTGACGAGATCTGCCGTCTTTGTAGAACTTCAAGGGGCGTTATGACTTACATTTTTAGTTGTTCCGGAGTGGATACGTCTGAGCCTCTGTCCGAGAGGTTGATGGACTTCGCAAACATAAAGATGTTTGAAGGTGATGGACTGCCATCATTGATATGTCATCAGTGCTTGTACCGCATTGAAAAGGCAATTGAATTCAAAAAGTTATGTGAACAATCAGATGGTCTTCTTCGTGAATATTTAGCTCCACAGGTGGGAACTAAAGAGCAAATGGAAAATGGAAATGGTATTACAAGTGAAGCTGATGCGAGGCCATTCATGATAAATAGTTCATTTCTACCTAGCAGATTCCATAGTGATACTAATTGCCTCATGAAAGAAGAGCCTGTAGATAATTATCCTACTGGAACACCTGATGGGAGTGATGATCTACAATGTGAATGTGATGATGGAGAAATGAATTGTTCCACATGCAACAAACATTTTGAAAACATTGACCAACTTAATAGGCACGTTTTAATTCATTCTCAGGAGGGCCCGTTCCCTTGTGACTTCTGTGAAGTCATAGAAAAGGACAAATCTTCTTTGAGAATTCATTGGAAAGACCATGCCGGCCAGCATTCACATGTTTGCCAAACTTGTGGGGAGTTTTTTCCAAGTAAAGCTTTACTTTTAGAACATAACCTTTGTCACGACAAGACTAAACCTCACCATTGTCCTGTTTGTCAAAAAGCTTTCACTTATCGATCTGATTTAAGGAAACATATTATTATCCATTCAGGTTTAAGGCCATATCATTGTCCTACATGCTTCAAATCATTCACCCGGAGTACAAATCTCAACAAGCACAAAAGGCTGCACTCTGGTAGAAAGCCATTCGCTTGCCTAGATTGTGATAAAGTGTTCTCTGCTCGGGGTGACCTTGTAAGGCATGCTGTCATACACACTGGTGAAAAACCTTATGCTTGCTCTATCTGTTCCATTTCATTTAACAGAAAAGACAAGTTAACTCGTCATGAGAAACTTCATTTAGGAGATCGAGCTTATCCTTGTCTAGAGTGCCCGACATCTTTTGCACGAAAAGAAGAACTAACCAAACACATACAATTCGTCCATTATTCTTCAGAAATGATTGAAAATGAAACAGAAGGGTCTGAAGAATATGAAGAAACAGAAGATGTAGTTATTAGTGTAGATCCTTCTCATTGGACGGGGGACCAGCCCTTGGCAACAGTAAAGAAAAAGCGAGGGAGAAAACCTAAAGAGCCTCCTTTAAGTACACCTAATCCAACTTATGACCCTGATAGAATATATGGTTGTGATTTCTGCTTCAAAAGATTCAGACAAAGGAGAGAACTAGTTAGGCACACGGCAATTCACACAGGCTATCGGCCTCATATATGCTCAGTTTGTGATAAAGCATTCGCACGTTCTGATAAACTGAAACGTCATATGCTAATCCATGAGAGAAATAAACAAAAGGAATCATTGAAGAAAAAAGAAAAACAGTGTGCCATTTGTTCCAAAGTTTTATCATCGAAAAATGAACTGAAGAGACATATTATGACCCATTCTTCTTCAAAGCCTTACCAATGCAGCCTCTGTCATAGTTCATACTGTCGTAGGGATAAACTTATTAAGCACATTAAGCAATCTCACCCAGATACTCTTCTTGCAAGTATCTCTGTTTACCCAAGTAATTCAAATTCTGTTTTACATGATAAAACTTAA
- Protein Sequence
- MDSIFQVPQHLGTTEEVNIDEICRLCRTSRGVMTYIFSCSGVDTSEPLSERLMDFANIKMFEGDGLPSLICHQCLYRIEKAIEFKKLCEQSDGLLREYLAPQVGTKEQMENGNGITSEADARPFMINSSFLPSRFHSDTNCLMKEEPVDNYPTGTPDGSDDLQCECDDGEMNCSTCNKHFENIDQLNRHVLIHSQEGPFPCDFCEVIEKDKSSLRIHWKDHAGQHSHVCQTCGEFFPSKALLLEHNLCHDKTKPHHCPVCQKAFTYRSDLRKHIIIHSGLRPYHCPTCFKSFTRSTNLNKHKRLHSGRKPFACLDCDKVFSARGDLVRHAVIHTGEKPYACSICSISFNRKDKLTRHEKLHLGDRAYPCLECPTSFARKEELTKHIQFVHYSSEMIENETEGSEEYEETEDVVISVDPSHWTGDQPLATVKKKRGRKPKEPPLSTPNPTYDPDRIYGCDFCFKRFRQRRELVRHTAIHTGYRPHICSVCDKAFARSDKLKRHMLIHERNKQKESLKKKEKQCAICSKVLSSKNELKRHIMTHSSSKPYQCSLCHSSYCRRDKLIKHIKQSHPDTLLASISVYPSNSNSVLHDKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -