Rped007588.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Riptortus pedestris
Gene Symbol
-
Assembly
GCA_019009955.1
Location
GWHBAZH00000003:172895348-172909616[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 44 0.21 12 6.6 4.6 2 23 144 165 144 165 0.97
2 44 0.095 5.5 7.7 4.5 1 23 172 194 172 194 0.98
3 44 0.003 0.17 12.5 1.1 1 23 200 222 200 222 0.98
4 44 0.0019 0.11 13.1 0.3 1 23 228 250 228 250 0.98
5 44 0.016 0.94 10.1 2.4 1 23 256 279 256 279 0.97
6 44 1.3 77 4.1 6.8 1 23 287 309 287 309 0.97
7 44 0.067 3.9 8.2 1.3 1 23 315 338 315 338 0.96
8 44 0.023 1.3 9.7 3.5 1 23 376 398 376 398 0.98
9 44 0.045 2.6 8.7 2.2 1 23 404 426 404 426 0.97
10 44 0.37 21 5.9 8.1 1 23 432 454 432 454 0.96
11 44 0.018 1.1 10.0 1.3 1 23 460 483 460 483 0.93
12 44 3.8 2.2e+02 2.7 2.2 1 21 488 508 488 510 0.92
13 44 0.06 3.5 8.4 7.2 1 23 517 539 517 539 0.99
14 44 0.0018 0.11 13.1 3.9 1 23 545 567 545 567 0.98
15 44 0.03 1.7 9.3 1.0 2 23 573 594 572 594 0.97
16 44 1.6 90 3.9 5.7 1 23 599 621 599 621 0.99
17 44 0.022 1.3 9.7 5.7 2 23 628 649 627 649 0.97
18 44 0.0055 0.32 11.6 3.8 1 23 681 703 681 703 0.98
19 44 0.00015 0.009 16.5 1.9 1 23 709 731 709 731 0.98
20 44 0.008 0.47 11.1 5.4 1 23 737 759 737 759 0.98
21 44 0.046 2.7 8.7 1.1 2 23 766 787 765 787 0.97
22 44 0.0036 0.21 12.2 0.3 1 23 792 815 792 815 0.95
23 44 0.0017 0.098 13.3 0.5 1 23 821 843 821 843 0.99
24 44 1.6e-05 0.00091 19.6 0.6 1 23 849 871 849 871 0.96
25 44 0.0011 0.063 13.9 2.9 1 23 993 1015 993 1015 0.98
26 44 0.002 0.12 13.0 0.2 2 23 1074 1095 1073 1095 0.95
27 44 0.0084 0.49 11.0 0.1 1 23 1100 1122 1100 1122 0.97
28 44 0.003 0.17 12.5 1.7 1 23 1128 1150 1128 1150 0.98
29 44 0.014 0.81 10.4 5.2 1 23 1156 1178 1156 1178 0.96
30 44 0.0002 0.012 16.2 2.1 1 23 1184 1206 1184 1206 0.99
31 44 0.24 14 6.5 0.8 1 23 1212 1234 1212 1234 0.97
32 44 1.6 95 3.8 4.1 1 23 1268 1290 1268 1290 0.95
33 44 0.52 30 5.4 5.4 1 23 1296 1318 1296 1318 0.98
34 44 0.014 0.83 10.3 4.9 1 23 1324 1346 1324 1346 0.97
35 44 0.00055 0.032 14.8 1.7 1 23 1352 1374 1352 1374 0.99
36 44 0.99 57 4.5 3.7 1 23 1380 1402 1380 1402 0.97
37 44 0.00023 0.013 16.0 3.3 1 23 1408 1430 1408 1430 0.98
38 44 0.04 2.3 8.9 2.8 1 23 1436 1458 1436 1458 0.98
39 44 0.016 0.92 10.2 2.4 1 20 1464 1483 1464 1486 0.93
40 44 0.0033 0.19 12.3 2.7 1 23 1492 1514 1492 1514 0.98
41 44 0.0044 0.25 11.9 1.2 1 23 1520 1542 1520 1542 0.97
42 44 0.0067 0.39 11.4 0.8 5 23 1551 1569 1549 1569 0.96
43 44 0.0095 0.55 10.9 1.6 2 23 1576 1597 1575 1597 0.96
44 44 0.11 6.3 7.6 2.2 1 23 1603 1625 1603 1625 0.98

Sequence Information

Coding Sequence
ATGCCCATAAATTCCGAAAATTTTATTAATATAAAACAAGAGCCATTGGACATCCCAGCTGAAGCAGAAGAAAACTTAGGTTATTATGAGGAGGCCGAAATTAATATCAAAGCAGAACCACCTGATTCACCGGTATATAATGAAATCAACTTTGGTGAAGCAGTCCCGGAGGAGGAAGAGGAACAGCCACAGTCGCCTATGGAAAATGCACAAGAGGAAGCTTATACTACTGAAAATGCTGAAGTTATTCCTGTGTGGACAATGGCCAGAATTAAGTTTGAGCCTGAAGTACATCCCACTATGTATGTCAGTAAGGACCAATTGCCGATTGAATTCAATGACTCTGATGAAGAACCAATTCCTGAAGCGGAACCAGTTCCTGAACCCGAACCTGAAGAAAACATCAAAGGAAAACGACTAAGGGAAAGAAGATGTAATTTCTGCAACTACAAAACAAATCGAGTAAAATTCTTCCGCCGTCACATGAAGCTTCACAGTGGGAGAGTTAAAGCATTTTCATGTCCTCATTGTGCTTATTTCAGTGGTACATCTTGCCAGCTCCAACTTCATCTCCGCAAGCATACCGGTGAAAAACCATATGCTTGCAACCAGTGTTCGTACAGGACTGCTTATCCTCACGCTCTAAAAGTTCATGTAAGAAGGCATGGTAATATTAAACCTTATCCGTGTAATTTATGCGACTACAGCACAAATTCAGAACAGGCTCTCAAAGTTCATTTAACTAAACATACTGGAGAGAAAGCTTTTAAATGTAGTGATTGTGATTTTTGTTCTGCATATCCGAATGCTTTGAAGATGCACAGAGAGAGGAAACATGGTGAAAGTGAGGGAAGAGACTTCCATTGCCAATATTGCGATTTTAAAACGACCGAGAGGCGGCAGTACAAAACTCATTTATACCGGCATACCGGGGAAAAGTTATTCAGATGCGATAAATGCGATTTTGAGACCATTTATACATATGCGCTTAAGGTCCATCGAGAGCGTAGGCATAATCCTAAAAGGCCTGGAGACAAAGAATTCTCTTGCGAACATTGTGAGTTTAGAACGTTTCGAGAAAAACGTTTTAAACTTCACCTGTACTCTCATACTGGAGAGAAACCGTATGCCTGTCATGAATGTAGCTATCGAACACTTTATAGCTACAGCCTCAAGCTTCATATGAGAACGCATACTGGCGAGAACCTATATGCTTGTAGTCAATGTGAGTATACAACTGCAATCTCAAGCCATTTCCAGACGCACATATATAAGCACAAAGGAGTAAAGCCTCATGCGTGCCCGCATTGTGACTATAGAACTCGGTGGCGCCACTGTTTGAAAGTACACATTCGGACCCATACCGGTGAAAAACCGTTTAATTGTACTAAATGTGAATTTCAGACTGCAAATCCTTCGTCACTCAAGAGCCATATTGACCATGTTCACGGCGACAAGGAATATTTATGTAAATTGTGCGATCATAAAGCGATTTCTTTAGCTGACCTAAGGGATCATTTGAAGTGTCATTCGAGAGAGGTTAAGACATACAAATGTTCATTGTGTAACTATTATACTTGTAATTCTGGTCATTTCAAAGTCCATCAGTTGAAGCATACTGGAGAAAAACCGTTTAAGTGTAGCCATTGCAGTTTTACTACTGCAAGTTCTTGGTATCTGAAAAAGCACCTGAAAATTCATGGCAGGGCTACTATAACTTGCTCTAAATGCGATTACACGACTGTGTTTCCATCTAGATACAAGCTCCATCTCATGAAACACGAACAGAAAGTATACAAGTGTGACCAATGCGAATTTCATACATCCTATTCGTGGTACTTAAAGTTTCATCAAAGGAAGCACTCGGACACTAAACCACTTCAGTGTCCCCATTGTGAATATAAAACATCCATTTCTAGTCATTTGAAAGTTCATTTACATAAACATTTAAAAGATAGTGCTGATATTGATTCGACTATCGAAAGGTTATCGGCTGCTGAATCCATTGATGTTATTGATCCTCATGATCCAGAGAAGCCGTATTGTTGTGAAATTTGTAACTATCGTACGACTAAAGAAAAATATCTTAACCTTCATTTGAGAATGCACACAAAAGAAAAGTCATTTTCATGCACTTCCTGCGATTACAGGACACCTAGAAAAAGTTACCTACTCATCCATATGAGAAAGCACACGGGAGAAAAACCATACTCTTGCGACTTATGCGAGTATCGATGTACAAGAAAAAGCAGGCTGAATGAACACAGGAAAAAGCACAATCTCGATAAACAAATTAAATGTAGAGATTGCGGTTTTGAAACATCTGATTCGTTCCGTATGAGGGAACACATCAAAAAGCATAATGGCGTTGTGTATAAGTGTGAAAAATGCGATTATATTACGCCAGTTTCTTTCAGCCTCAAAGTGCACATGGCTCAGCAGCATTCGGGTGTCAAACCATACAAATGCAACCATTGTGACTATTCTGCAGCTCTTCCACGTTCCCTCGAGATTCATCTTCAGTCTCATGCAGGAACAAAGCCTTATGCCTGCGATCAATGCCCCTTTCGCTTCCGCAACGCTTCCAACTTAAAGGCACACCTTCAATTTCATTTGCAAATGGCTCAAAGACTGACTCAAATTAAGTTGAATTGCATTAATCCTGAAATGATTCCTAACGTTCCTATGAATACTTTAATAACTATACCATTGAGCATTCCGATGAAGATACCTGTGAAAATTCCTGTGTATCCTCCACCTCTTCTTCCGAAGGCGGTTTTCCCAAAATTTGTTGTGCCAAACACCCTCGAAAAAAAACCTGTCGAATCAATAGTTCTTCCTGGGGGAAAAAGTAAATTAATTGCTGATGAAATGTGTTCTACAAAAGCAAATGAAGACAAAACTGCATCAAAACCCGGAGATAAATCTAGGGTGATTAAAAAAATAGCATCGGAAAATGGTCCATTAAGTACAAATTTTAAATGCCCACTGTGTGATTTCTGTGCCAGAAGTAAAACTTCTCTTAAAAGGCATGGAAAAGTTCATAGGAATTGCTGTGAAAATTGCGGTTTCAAAACTTCTGATGATGCTATATTCAAGAAACATAAATGCAACGGCTCTGATTCTAAGTTGTTCTCATGCCAGTTTTGCGAATATAATTCTCCTTTTGTTTACTGCCTCGAGCTTCATCATAGAAAACATACGGGTCCAAAATTGCTTTCCTGTGCACTTTGCGAATGCCCATTTTCGAATCCAGTACAACTTAACACACATATGGCAGAACATACAACTGACAAATTTACTTGTCCCGATTGTCAGTTCATAACAACTGCCGCGTCTGCTCTTAAAACTCATGTCGATATGCATAGAAATGATAAGCCATTTAAATGCTCGCGATGCGACTACAGGGCCGCTAAATCATACTCGTTGAAGTTGCACATGCTGAAACATACAGGGGAGAAGCCTCATGCATGTCCTCACTGCAGTTTCCGAAGCACTACAAGTTATTCCCTTAAGACGCATATAACAAAGCACACAGGTGAAAGGCCATTCAAGTGCACCGAATGTAGTTATTCCGCTGCCCATTCTTCTACCCTCAAAATCCATATGTCTACCCACAAAAAAGACAAGACTTTTTCTTGCGACCTTTGCGATTTTAAAACTTCAATATCGGCCACTTTCAAAGCTCACAACCGTGAGCATTCCTCTCAGAAGCCGTATAAATGTGCGCACTGTGCTTTTGCTACGCCTAAACTCAAATACATTATAAAACATACAGCCGATCACTCCGGAGAAAAATCGTATTGCTGTCCTCATTGTCAATTTAAAACGGGTGAAACCACATTGCTAAAACGTCATCTTGATGAGCATCCTGAGGAAAAGCCATTTTCTTGTTCCAAGTGCGAGTTTCGCGCTCGCAGCTCCACTCATTTCAAAGCGCATTCTAAAAAACACAATGGGATTAATTTTCACTCCTGTTCTGAATGCAATTACTGCACTGACATATCCAATAATTTAAGAATACACATGAAGAAACACTCGAATGCTTGGCCATACAAATGTAACCAATGTGACTATATGTCTGCCAATCGTGCTCGACTGAAGAAACATTTGAAAAGTCATTCCGGGGAAAAACCTTTTAAGTGTAGCACGTGTACTTACTCTTGCCTGAGTGAGAAAGATCTGAATCAACATCTGGTCAAGCATTCGGGACAGAAACCTTTCTCGTGCAAGTTTTGTTCGTTCAGTACTGCTAGATCGTCTTATCTGAAAATCCATATGAGAAAGCATACCGGTGAGAAGGTCCATCGTTGCACTTACTGTGACTTTTCTGCGACGCTTAAAGGAATATTGAAAAGGCATTTGAGGACTCATACAGGCGAAAAGCCATTCACTTGTGACCAATGCGGTTTTAAATCTGCTTCGAAATATCATCTGAAACTTCACATTTGGAAACACAGTGATACAAAACCACACACTTGTACAGTTTGTGGTTATAAAACTATTTCTTTGAGTAGCTTTAAAATACACGAAAGAAAGCACACTGGAGAACAACCGTTTTCATGCTCTGAATGCAGCTTTAAAGCAGCCAGTAAAAGTTCTTTAAAGAGGCACTTAGTAAAGCACAACATAGGTAATGTCTTTACTTGTGATTGTGGTTATAAAACTACTACACCCTATTCTCTTAGGAAGCACAAGATAACACACTCTTTGGATAAGCCTTTATCATGTGCTCAATGCGAATTTAAAACGGCCCATTCCTGGTCTCTGAAAGTTCATATGCGCAAACACAAAAACAAAAAGATGTATACATGTGCGGAATGTAATTTCTCCACTTCGAAGAAAAAGGAATTTGATTCTCACAAACTTTCACATACAAATGTTTTAAATAACTTGAAGGCCCATGGTGATATATCTGTTAAAGACAATCAAAAGCATAAGGATGAACCGACTGATCCAATCAAAAGCAGTACATTTGAAAGTGATGACTTACCTAATAAAGTGTTGTCTGAGGGTGTGGAAAATCCACCTGAAGTTGAGAATGCTTAA
Protein Sequence
MPINSENFINIKQEPLDIPAEAEENLGYYEEAEINIKAEPPDSPVYNEINFGEAVPEEEEEQPQSPMENAQEEAYTTENAEVIPVWTMARIKFEPEVHPTMYVSKDQLPIEFNDSDEEPIPEAEPVPEPEPEENIKGKRLRERRCNFCNYKTNRVKFFRRHMKLHSGRVKAFSCPHCAYFSGTSCQLQLHLRKHTGEKPYACNQCSYRTAYPHALKVHVRRHGNIKPYPCNLCDYSTNSEQALKVHLTKHTGEKAFKCSDCDFCSAYPNALKMHRERKHGESEGRDFHCQYCDFKTTERRQYKTHLYRHTGEKLFRCDKCDFETIYTYALKVHRERRHNPKRPGDKEFSCEHCEFRTFREKRFKLHLYSHTGEKPYACHECSYRTLYSYSLKLHMRTHTGENLYACSQCEYTTAISSHFQTHIYKHKGVKPHACPHCDYRTRWRHCLKVHIRTHTGEKPFNCTKCEFQTANPSSLKSHIDHVHGDKEYLCKLCDHKAISLADLRDHLKCHSREVKTYKCSLCNYYTCNSGHFKVHQLKHTGEKPFKCSHCSFTTASSWYLKKHLKIHGRATITCSKCDYTTVFPSRYKLHLMKHEQKVYKCDQCEFHTSYSWYLKFHQRKHSDTKPLQCPHCEYKTSISSHLKVHLHKHLKDSADIDSTIERLSAAESIDVIDPHDPEKPYCCEICNYRTTKEKYLNLHLRMHTKEKSFSCTSCDYRTPRKSYLLIHMRKHTGEKPYSCDLCEYRCTRKSRLNEHRKKHNLDKQIKCRDCGFETSDSFRMREHIKKHNGVVYKCEKCDYITPVSFSLKVHMAQQHSGVKPYKCNHCDYSAALPRSLEIHLQSHAGTKPYACDQCPFRFRNASNLKAHLQFHLQMAQRLTQIKLNCINPEMIPNVPMNTLITIPLSIPMKIPVKIPVYPPPLLPKAVFPKFVVPNTLEKKPVESIVLPGGKSKLIADEMCSTKANEDKTASKPGDKSRVIKKIASENGPLSTNFKCPLCDFCARSKTSLKRHGKVHRNCCENCGFKTSDDAIFKKHKCNGSDSKLFSCQFCEYNSPFVYCLELHHRKHTGPKLLSCALCECPFSNPVQLNTHMAEHTTDKFTCPDCQFITTAASALKTHVDMHRNDKPFKCSRCDYRAAKSYSLKLHMLKHTGEKPHACPHCSFRSTTSYSLKTHITKHTGERPFKCTECSYSAAHSSTLKIHMSTHKKDKTFSCDLCDFKTSISATFKAHNREHSSQKPYKCAHCAFATPKLKYIIKHTADHSGEKSYCCPHCQFKTGETTLLKRHLDEHPEEKPFSCSKCEFRARSSTHFKAHSKKHNGINFHSCSECNYCTDISNNLRIHMKKHSNAWPYKCNQCDYMSANRARLKKHLKSHSGEKPFKCSTCTYSCLSEKDLNQHLVKHSGQKPFSCKFCSFSTARSSYLKIHMRKHTGEKVHRCTYCDFSATLKGILKRHLRTHTGEKPFTCDQCGFKSASKYHLKLHIWKHSDTKPHTCTVCGYKTISLSSFKIHERKHTGEQPFSCSECSFKAASKSSLKRHLVKHNIGNVFTCDCGYKTTTPYSLRKHKITHSLDKPLSCAQCEFKTAHSWSLKVHMRKHKNKKMYTCAECNFSTSKKKEFDSHKLSHTNVLNNLKAHGDISVKDNQKHKDEPTDPIKSSTFESDDLPNKVLSEGVENPPEVENA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-