Rped003083.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000002:180717354-180731355[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0015 0.085 13.4 5.9 1 23 102 124 102 125 0.96 2 17 0.00079 0.046 14.3 0.9 2 23 142 163 141 163 0.97 3 17 4.1e-06 0.00024 21.5 0.7 1 23 169 191 169 191 0.97 4 17 1.2e-05 0.00068 20.0 1.8 1 23 197 219 197 219 0.98 5 17 4.9e-05 0.0028 18.1 0.9 1 23 226 248 226 248 0.98 6 17 0.03 1.7 9.3 3.1 1 23 254 276 254 276 0.98 7 17 2.2e-06 0.00013 22.3 0.3 1 23 282 304 282 304 0.96 8 17 4.6e-07 2.7e-05 24.5 0.2 1 23 310 332 310 332 0.98 9 17 0.0054 0.32 11.6 0.6 3 23 341 361 340 361 0.96 10 17 2.4e-05 0.0014 19.0 1.8 1 23 422 444 422 444 0.97 11 17 0.00033 0.019 15.5 0.4 2 21 447 466 446 467 0.94 12 17 1.5e-05 0.00085 19.7 1.7 1 23 504 526 504 526 0.98 13 17 0.0064 0.37 11.4 0.7 1 23 532 554 532 554 0.98 14 17 9.2e-06 0.00053 20.4 0.3 1 23 560 582 560 582 0.98 15 17 0.005 0.29 11.8 2.6 1 23 588 611 588 611 0.93 16 17 0.0066 0.38 11.4 0.6 3 23 616 637 614 637 0.96 17 17 1.3e-05 0.00073 19.9 0.5 1 23 725 747 725 747 0.96
Sequence Information
- Coding Sequence
- ATGGCGACCGTAGTGGAGCCGATGGAGGGCTGTAATTTAAAAGATGAAGCATTTATATTTAATGAGGATTACTTATTAGATTTACATGAAGAAGAAGTTATAGCAGAACAGTTAGAAGCCGTGGACGTTGTTAATGAACAGCGGGAAGATCATGAAGAAATCGTACACGCTACTAACAGCATACTACCAGAGGGCTATGACCCTCTTGACCCAACACAATGGTCTCACGAAGAAGAAGTCGTAGATTCATCAGATCAACCTTTCATTAAGCAAGAAGTAATCGAAGAAGAGCAGACCCATGTTTATGAATGTTATAAATGTGCTCGAAGATTTAATTTTAAAGACAAACTTTTCAAGCATATGAAACTTCATCATGCTCGAGGCGATGATGTGATGATAGAAAGGGATGGAAAGAGGATTTGGACATGTACACAGTGTGATAAAACCTTCATATCTCGAAAAGGCTCTATTATTCATCAGCGAACACATACTGGTGAACGACCTTATTCATGCAGTGTTTGTCAAAAGCGATTTATAGACAGCAGTACACTCATGAAACATCAAGTTATTCATCAGGCTACCCGGCCCTTCACATGTGTTGTATGTCATAGAGGTTTCAATCAAAAAGTTGCTCTTCAACGCCATGAAAGAACTCATGGTCAACTTCAGCCCACATTCAAATGTAAATATTGTCCTAAAACCTTTTTAGTTTCCAGCAGTTTACAGGCCCATGAGAAAATCCATTCGGGCATCAAACCTTATACCTGCCAATATTGCCCTTCCCGTTTTCACACATCTACTGCACAAAGGCAACATGAAAGAGTTCATACAAATGAGCGCCCATATGCTTGTAACTATTGTCCAAAAGCTTTTAAAGATTCAGGGACATTATTTAAACACCAGGTTATACATTCTGGAATTCGACCATTTGTTTGCCCTATTTGTTCCCAAGGTTTTACCCAAAAAGTTGCTCTCCGAAAACATATTAGATCTCATGTTTCACGTCATGTTGGAAATAATTGTGAAGTTTGTGACAATGTTTACTTCAACAAAGATGAGCTATGTAGTCATATAGAAGAGCATATTGAGCAGCATCCCAGTTTTACTCAGGTTAAAAATATTGCCACATCATCATTACGTGTAAAAACACTGCCATTAAGTCCTGAGCCTCCTGAACCTGAAGTTAAAGAGAGTGGTGATCTTAGTGACCTTGCAACACTCTGTGATGTAGCCATCTCTACTGCTGGTGATCTAGCACACTCCTACCCATGTCTCCATTGTGGAATGAGTTTCAGAAGAAAAAAATCTTTGGACTCCCACCTCTCGATCCATAGGACCACTTGTAAATACTGTGATAGGCCTTTTCCTGACAAAAACAAATTGGAAGAACATGAAAGGAAATTATGTGCAGAAACAACTCCCCCACCTCAGTCTGAAGGCGAAAGAGTTTTTGACGGGATTCCAGTTGTAAGAGAACAGTACCCAGCAGGAAAACATCCAAAACGATTTTTTTACTGCGAAAGATGTGATAAAACTTTTAGTTCGAGAAATGGCTATATCATACACCAACGTAGCCACACTGGTGAACGTCCTTACCCTTGCAGATGGTGTGAAAAAGCTTTTGGGGATTCTGCAACCAGGCACAAACATGAAAGGATACATACGGGTGAACGGCCCTTCAAGTGTTCTCGTTGCCCTCGAGCTTTCAATCAGAGAGCTGCGTTGAGAGCACATCAAGTTACACATACTGTGGACAGGGCATTCTTGTGTAAGTATTGTCCTTCAAGCTTCCCTTATTTTGCTACCCTTAAACGTCACCAGCAAGCATGCCATAATGAAATAGCCTGCCCCTTATGCAGTATTTCAACTAATGATGCTAAAAAACTCCATACCCATATTATGACAAAACATATAAGTATGGTCAATGGGAGCATCACATGTGTTCTTTGTGAATCTGGAATATTTACTGATCCAAGCGAATATGGAGACCACATTGTTTGGCATGGTAAACAGTTAGCTACTGGTGCCAAGAGCAGACCTTCACCTCGCCGACGACAAATTGTCAGAAAGAAAACTTCACCTCCAAGGACTACAGAACCCGAAGATGAACCCGTAGAACAGGTTATCGAACAAACAGTTGTGACTGATGATTACCATATTGTTGATGGTGCCCATGTCTGTTCTATGTGTGGCATTATATTCTCTGATAAAGAACAGCTTAAAAAGCATGCTACAGTCCATCTTTAA
- Protein Sequence
- MATVVEPMEGCNLKDEAFIFNEDYLLDLHEEEVIAEQLEAVDVVNEQREDHEEIVHATNSILPEGYDPLDPTQWSHEEEVVDSSDQPFIKQEVIEEEQTHVYECYKCARRFNFKDKLFKHMKLHHARGDDVMIERDGKRIWTCTQCDKTFISRKGSIIHQRTHTGERPYSCSVCQKRFIDSSTLMKHQVIHQATRPFTCVVCHRGFNQKVALQRHERTHGQLQPTFKCKYCPKTFLVSSSLQAHEKIHSGIKPYTCQYCPSRFHTSTAQRQHERVHTNERPYACNYCPKAFKDSGTLFKHQVIHSGIRPFVCPICSQGFTQKVALRKHIRSHVSRHVGNNCEVCDNVYFNKDELCSHIEEHIEQHPSFTQVKNIATSSLRVKTLPLSPEPPEPEVKESGDLSDLATLCDVAISTAGDLAHSYPCLHCGMSFRRKKSLDSHLSIHRTTCKYCDRPFPDKNKLEEHERKLCAETTPPPQSEGERVFDGIPVVREQYPAGKHPKRFFYCERCDKTFSSRNGYIIHQRSHTGERPYPCRWCEKAFGDSATRHKHERIHTGERPFKCSRCPRAFNQRAALRAHQVTHTVDRAFLCKYCPSSFPYFATLKRHQQACHNEIACPLCSISTNDAKKLHTHIMTKHISMVNGSITCVLCESGIFTDPSEYGDHIVWHGKQLATGAKSRPSPRRRQIVRKKTSPPRTTEPEDEPVEQVIEQTVVTDDYHIVDGAHVCSMCGIIFSDKEQLKKHATVHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00757486;
- 90% Identity
- iTF_00757486;
- 80% Identity
- -