Basic Information

Transcription Factor Domain

TF Family: GTF2I
Domain: GTF2I domain
PFAM: PF02946
TF Group: Other Alpha-Helix Group
Description: This region of sequence similarity is found up to six times in a variety of proteins including GTF2I. It has been suggested that this may be a DNA binding domain [2, 1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.022 4.2e+02 1.5 0.0 39 47 8 16 3 23 0.85

2 7 0.0033 63 4.1 0.0 37 47 43 53 24 63 0.68

3 7 0.0044 83 3.7 0.0 37 47 80 90 61 97 0.71

4 7 0.0036 68 4.0 0.0 37 47 117 127 98 134 0.66

5 7 0.0034 64 4.1 0.0 37 47 154 164 135 171 0.65

6 7 0.0016 30 5.1 0.0 22 47 175 201 172 208 0.69

7 7 0.0036 68 4.0 0.0 37 47 228 238 209 245 0.66

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.022	4.2e+02	1.5	39	47	8	16	3	23	0.85
2	7	0.0033	63	4.1	37	47	43	53	24	63	0.68
3	7	0.0044	83	3.7	37	47	80	90	61	97	0.71
4	7	0.0036	68	4.0	37	47	117	127	98	134	0.66
5	7	0.0034	64	4.1	37	47	154	164	135	171	0.65
6	7	0.0016	30	5.1	22	47	175	201	172	208	0.69
7	7	0.0036	68	4.0	37	47	228	238	209	245	0.66

Coding Sequence: ATGCCCCGGGAAGCCCCAGACCTGGAAGGACTCCCAGATGGAGTTTCAACAAGTTCTTGTCATCCCTTCTATGAAGCCCCTGTCCCGATAGGATATCCCAATGATGATGGTGAGTCTTGCTTGCTTATAACTCTAGAAGGACTCCCAGATGGAGTTTCAACAAGTTCTTGTCATCCCTTCTATGAAGCCCCTGTCCCGATAGGATATCTCAATGGTGATGGTGAGTCTTGCTTGCTTATAACTCTAGAAGGACTCCCAGATGGAGTTTCAACAAGTTCTTGTCATCCCTTCTATGAAGCCCCTGTCCCGATAGGATATCCCAATGATGATGGTGAGTCTTGCTTGCTTATAACTCTAGAAGGACTCCCAGATGGAGTTTCAACAAGTTCTTGTCATCCCTTCTATGAAGCCCCTGTCCCGATAGGATATCCCAATGGCAATGGTGAGTCTTGCTTGCTTATAACTCTAGAAGGACTCCCAGATGGAGTTTCAACAAGTTCTTGTCATCCCTTCTATGAAGCCCCTGTCCCGATAGGATATCCCAATGATGATGATGAGTCTTGCTTGCTTATAACTCTAGAAGGACTCCCAGATGGAGTTTCAACAAGTTCTTGTCATCCCTTCTATGAAGCCCCTGTCCCGATAGGATATCCCAATGATGATGGTGAGTCTTGCTTGCTTATAACTCTAGAAGGACTCCCAGATGGAGTTTCAACAAGTTCTTGTCATCCCTTCTATGAAGAGATATCTCAGCAGCTGTGA
Protein Sequence: MPREAPDLEGLPDGVSTSSCHPFYEAPVPIGYPNDDGESCLLITLEGLPDGVSTSSCHPFYEAPVPIGYLNGDGESCLLITLEGLPDGVSTSSCHPFYEAPVPIGYPNDDGESCLLITLEGLPDGVSTSSCHPFYEAPVPIGYPNGNGESCLLITLEGLPDGVSTSSCHPFYEAPVPIGYPNDDDESCLLITLEGLPDGVSTSSCHPFYEAPVPIGYPNDDGESCLLITLEGLPDGVSTSSCHPFYEEISQQL

Sequence clustering based on sequence similarity using MMseqs2