Rped002556.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- -
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000002:152437825-152438507[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.5e-07 0.00022 20.9 0.0 2 38 13 48 12 55 0.88 2 2 0.3 89 3.0 0.1 29 40 59 70 59 74 0.80
Sequence Information
- Coding Sequence
- ATGGGCCCCAACGAATTGAAAATTTGGAAATATCCTGAGGAAAGTATGCTCAGTGCTATTGCTGATGTCCATCGTGGTGTCCCAATAGCCACAGCAGCGAAAAGACATGGAGTGCCACGAATTACCCTAATGAACAAAGCAAAAGGGAAATCACCATTAAGACAAAAGAAAGGACCGACATCTACCTTAACCTCAAGGAAGAAGAAGCGAGAGTTGGAAGGAAAGAAGAAAGAGAGGGCCTTAACTAGGCTCAAAAAGAAGGAAGAGAAAGAGAAACAAATGAGGGAAAAAGCAGAAGAAAGGGCAGCCAAAAATATGCAAAAAGAAAAAAAAAGGAATGAGGAAGGAAATATCATCATCTGA
- Protein Sequence
- MGPNELKIWKYPEESMLSAIADVHRGVPIATAAKRHGVPRITLMNKAKGKSPLRQKKGPTSTLTSRKKKRELEGKKKERALTRLKKKEEKEKQMREKAEERAAKNMQKEKKRNEEGNIII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -