Rped013115.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- lov
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000005:105649974-105675500[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.2e-18 2.4e-15 56.0 0.0 1 44 347 390 347 391 0.96
Sequence Information
- Coding Sequence
- ATGAGCTCAGCACACTACTCGCTGAGGTGGAACAACCACCAAAGCCACCTGTTGACTGCCTTTGACTCACTTCTCCAGAACGAAACTCTCGTAGATGTGACACTCGTCTGCGAGGAAACCAGCTTCAAGGCCCACAAAGTAGTCCTTTCGGCTTGCAGCCCATACTTCCAGAGGATATTCTCAGAGACTCCTTGCAAGCATCCGGTCATCGTGCTGAAGGACCTCCGAGGATGGGAGGTGCAGGCGATAGTGGACTTCATGTACAGAGGGGAGATAAGCGTCGGCCAGGAACAGCTCAGTGCGCTCATCAAAGCAGCTGAGTCCTTGCAGGTTCGAGGCCTGGCCCACACGGAGAGGATCCCCGTCTGCGGGAACGACAAGGAAGCCCCGCGGGAGAGGTACTCGCCCCAACAGAACTATGACTCAAGGCTGCCAACACTACCACACCTCCCCAATATTTCTTTCACCGAGGGGCGACACTGCTCTTCACCCCTACCTAGGAGAAAACAGGCAAGGCCAAGAAGGAGGTCAGGTGACACCAGTGGACCACAAGATCTTCGAACAAAGAGCCCCGAACCCAGAGGAGCAGACACAGCGGAAAATCTGAGTATGAAGAAACAGGGGAGACAAGGAGCCACCCCAACACCACCACAAGTTAATATGAAAATGGAAAGTGATGATTCAGAGCCTCCAGATTCAAGTCAATCTCAACCTGTTGAGCTGACAACAACACCACAGGAACCTAGAATCGACTTCAACAATACTGAGCCAATGGGCATGCATCCTCCCCATCATGACTCACCACTTGAGAACTCCTTTCCTCATTTAGCTTCGATCTCCTCCTTGTCACTCACCCCTCCACACATGTTTTCTTTGGACTCTCAATTTGGGCTCTTCCCAGGAATGGATAATTGTAGAAATCCTCTTCTCAACGATCTCGCAGATCAGAGGCTCGACAATCATATTTCTAATAAAAAGAAAATGGGGCGTCCCAAAGGACAGCACAGTGCTCCTCGAGGTGGACCACCCAGATCCTGGACAAATGCTGAATTGACAGAAGCTCTACAGCATGTGTGGAACAAGAAAATGACCACATCTCAAGCTTCTCGAATATTTGGAATACCATATAATAGCCTTTTAATGTATGTAAGAGGAAAGTATGGGAAGTCATTGAAGTTGGAACAGCTTAAAAAAGAATGTTTTGGTGAACTTGGAGGTCCCTTAGACCTTTTAGGATTAGGAAATATTTCAAATAACAATAATCCTCCCCCTAAGCCGAAGATGCCAGAGCCAGATCTTATGCTGGGGCCACCTGGATTTAATCCAGGTCCTTACCCAACTGCCAACTTTTATCCAGATTTTGGAGCCTCATTTCCTGTTCCAGTTGGAATGGTTCACTTACTTCCTCAATCTGAGAAAAACCGAGAGCCTGTAGATTTTGCGAAAGAAGAATCAAGAGCTACACCTATGGAGTACCAAAAAGAAGACCTTAGGAATTCGCCAATGGCTCTCGACTACGTAAAAGAAGAAACGCATGGGAACAATTGCATTGAGAATGATGAATCAAGCAGTCCACGAAATAGAGAGATGCAGCAAACCCAAAACGGTCAGGATTGA
- Protein Sequence
- MSSAHYSLRWNNHQSHLLTAFDSLLQNETLVDVTLVCEETSFKAHKVVLSACSPYFQRIFSETPCKHPVIVLKDLRGWEVQAIVDFMYRGEISVGQEQLSALIKAAESLQVRGLAHTERIPVCGNDKEAPRERYSPQQNYDSRLPTLPHLPNISFTEGRHCSSPLPRRKQARPRRRSGDTSGPQDLRTKSPEPRGADTAENLSMKKQGRQGATPTPPQVNMKMESDDSEPPDSSQSQPVELTTTPQEPRIDFNNTEPMGMHPPHHDSPLENSFPHLASISSLSLTPPHMFSLDSQFGLFPGMDNCRNPLLNDLADQRLDNHISNKKKMGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLKKECFGELGGPLDLLGLGNISNNNNPPPKPKMPEPDLMLGPPGFNPGPYPTANFYPDFGASFPVPVGMVHLLPQSEKNREPVDFAKEESRATPMEYQKEDLRNSPMALDYVKEETHGNNCIENDESSSPRNREMQQTQNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01298288;
- 90% Identity
- iTF_01309537; iTF_00715213; iTF_00715017; iTF_00763952; iTF_00763786; iTF_01298288; iTF_00165332; iTF_00165135; iTF_00757465; iTF_00757238; iTF_01095744; iTF_01095910;
- 80% Identity
- iTF_01309537;