Rped008941.1
Basic Information
- Insect
- Riptortus pedestris
- Gene Symbol
- Trl
- Assembly
- GCA_019009955.1
- Location
- GWHBAZH00000004:40089804-40103567[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.8e-08 5.2e-06 26.1 0.0 4 37 185 218 183 220 0.91 2 3 7.4e-11 2.2e-08 33.7 0.0 4 41 235 271 233 275 0.92 3 3 5.3e-12 1.6e-09 37.4 0.0 1 40 430 469 430 473 0.93
Sequence Information
- Coding Sequence
- ATGCCATCACCAGCAGACTTTTATTGTGTCAAATGGAATGATTATAATACCCATCTTGGTCGCTTTTTTTCTCAACTTTTGACTTCTGAACAATTCACAGATGTCACACTATGGGCGGAAAATAAAAAATTCAAGTGTCATAAAGTTGCCTTATCTGCTGGGAGCCCTTACTTTCAAGAGGTTCTTAGTTCTTTAAACATGGAACACCCTGTAATTGTTTTGGTTGGAGTTCAAGCTGAAGATATTAAGTTAATACTTGATTTTCTTTACCACGGTGAAATAAGAAATGTTGATTCTAAGCGGTTCTCATCTCTTTTAAACACAGCAGGAAAATTGAAAATACATGGCCTAACAGAGGTCACTATTGTCCAATCATCTGGGAAACTTTTCCAAGGAAACAGCCAGTCTGATAAAGCGGATTCAGATTTAACAAATGAAAATCATGCCCCTTCAGTTGAAGTCAATGTAGCTGAAAGAAGTTCTAGTGACTCAAGTGAAAAGGAAAACACAGGGAAAAAAAATAGGACCAGAGCTACATACAATGAAGGAGGAAATCTTGAGCGTGCTTTGCAACAAATGGAGTGGGGTATGTCTCTTCCTGAAGCAGCAAAACTGTATAATATTCCAAGATCTACACTATATGTCAAAGCAAAACTTCATTCTGGTCTAAATTTGGCCTCCAGAAAAGATCATAAAGCCCAGGATTTAAATCCTGCACTTCAAGCAATAGCTGATGGAATGAGTTTAAAACGAGCATCAGATGAATTTAAAATACCAAAAACAGTTCTTTGGAGAAGAGTCCAAAAGAGACTGGACATTTTAAATAAAGTGAAATGTAGGAGAAATAATACTGGTAAACAGCTAGATTCTGATGTCAGTGCGGAGTCAAATGGTGGTGTCATGAAGCGAGACAATGTTAGTTTTGAGATGCTAGAAAATGCTGTTTTAAAACTGTTTGAAGTTAGTGACCATAAAACAGAGAGAGGTAGTGAGAGGAATGTGCAGGATGGTGATTGTACCAAGGTGCCGGAAAGCAATAATGAAATAATTGAGAGCAATTATATGCAAGTGAGAAGTGACCCAGTGAAGATTGAGAATGATGGAAACTTTCAGGATGTTAGTACTGTGATTCAGAAGAGTCCTGTTGGAGAGCAGCACAGTTCAAATGAAAATCTCATTGAAGTTTCAGAAGAGGTTACCTACAGGAATTCAGATAATGTCCAAAGTGAAATCATAACAGAAGTAGTAGACTGTGAAGAAGAAAAGAAATTGGAAGAAATGTCATTAAAGAATACGAGATTGTCAGAAGCTGTTGAAGCTTGTAAGACGGGCAAAATGTCTCAGGCCATGGCTTCATCAACTTTCTTGGTTCCAAAAACAACAATTTGGAGGCGATTGAAAAAAAATACACGCCAAGAAGAAAAGCAGCAGAAACAAAAGTTACTACTAGGAAAACTCATGCAAAAGCAAAAAGTATTCATTGAAAAAGAGGACCATCGATATACATTAACAGATAAATTCCAACGTATTCCAAAAAGACGTCTTACTACAGTATCAAAACCGGTACTTCCATCTCAGGTGCAATATCATACCAACCAAGAACATCCATTAACTCCACCAAGCTCCAATGATGAAGAGATGACCGATGTTTGTGATGTAGTTACAGTAGTAGTTGGTTCAGATGTGCCAAGTTAA
- Protein Sequence
- MPSPADFYCVKWNDYNTHLGRFFSQLLTSEQFTDVTLWAENKKFKCHKVALSAGSPYFQEVLSSLNMEHPVIVLVGVQAEDIKLILDFLYHGEIRNVDSKRFSSLLNTAGKLKIHGLTEVTIVQSSGKLFQGNSQSDKADSDLTNENHAPSVEVNVAERSSSDSSEKENTGKKNRTRATYNEGGNLERALQQMEWGMSLPEAAKLYNIPRSTLYVKAKLHSGLNLASRKDHKAQDLNPALQAIADGMSLKRASDEFKIPKTVLWRRVQKRLDILNKVKCRRNNTGKQLDSDVSAESNGGVMKRDNVSFEMLENAVLKLFEVSDHKTERGSERNVQDGDCTKVPESNNEIIESNYMQVRSDPVKIENDGNFQDVSTVIQKSPVGEQHSSNENLIEVSEEVTYRNSDNVQSEIITEVVDCEEEKKLEEMSLKNTRLSEAVEACKTGKMSQAMASSTFLVPKTTIWRRLKKNTRQEEKQQKQKLLLGKLMQKQKVFIEKEDHRYTLTDKFQRIPKRRLTTVSKPVLPSQVQYHTNQEHPLTPPSSNDEEMTDVCDVVTVVVGSDVPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01309570;
- 90% Identity
- iTF_01309570;
- 80% Identity
- iTF_01309570;