Rmar003704.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ricinus marginatus
Gene Symbol
nfxl1
Assembly
GCA_028565995.1
Location
JAOWBB010000006.1:684039-689599[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 3 3.6e+04 -5.1 1.9 15 19 169 173 169 173 0.85
2 17 0.2 2.4e+03 -0.4 0.4 4 10 204 210 203 210 0.95
3 17 1.3e-07 0.0016 19.4 16.7 1 19 218 235 218 235 0.99
4 17 6.6e-09 7.9e-05 23.5 9.7 1 19 271 289 271 289 0.98
5 17 1.7 2e+04 -3.3 1.5 6 10 314 318 313 318 0.90
6 17 3.1e-07 0.0038 18.2 11.3 1 19 324 342 324 342 0.99
7 17 1.4e-05 0.17 12.9 13.3 1 18 377 394 371 395 0.89
8 17 0.41 4.9e+03 -1.4 0.5 1 10 404 413 404 413 0.73
9 17 0.028 3.3e+02 2.4 11.2 3 18 431 446 429 447 0.91
10 17 5.2e-09 6.2e-05 23.9 13.8 1 19 456 474 456 474 0.99
11 17 0.00035 4.2 8.4 5.6 10 19 523 532 520 532 0.91
12 17 0.023 2.7e+02 2.7 6.8 1 12 542 552 535 552 0.86
13 17 3 3.6e+04 -6.2 5.2 14 19 581 586 578 586 0.82
14 17 0.00011 1.3 10.1 5.4 1 12 622 633 616 633 0.80
15 17 1e-05 0.12 13.4 15.8 1 19 662 679 662 679 0.94
16 17 9.1e-06 0.11 13.5 11.8 1 16 724 738 724 744 0.92
17 17 0.01 1.2e+02 3.8 0.9 5 11 774 780 774 781 0.96

Sequence Information

Coding Sequence
ATGAGTTATCACCCGGGGACAAGCAGGGAGAGAAATCCTTGGACAGTCCCTAATTTAGATCAAACATCTAAgcaaaatagtgaaaaatgtcaaaatgacGGGGAAAAGTCAGAAAACAAATTCCGAACTGCCCAGCAAAATATTCAGGctaatattcaaaaacatttgGAACAAGGTTATGAATCTTCTTCATCAGAAGAAGAAATAGAATATgaaccaattttaaattctgttttcaAAGGTTACTCTCAGTTAAGTGGCACTCTAGAAggattagaaaaaattcataaatttttggaaaatacatttcaatcAGGAACTGGAATTTGTCTTATTTGTATTGCTAGTGTAAAAAGAATTGATCCTATTTGGAGTTGTATGAAGTGTTatggattttttcatttgaactgTATACAAAAATGGTCAAgggataatatttttcaacaaaaacaaattcaagaGGATTTGCCTGAATTTAAAAGAACCAATAAGGTTTTTTGGGGATGTCCTAAATGTCGTCAAAAATATGAACCATCTGATATTcctcaaaaaagtttttgcttcTGTGGCAAAGTTCAAGATCCACCTTATCAGCCATTTTTAGTCCCTCATTCATGTGGTGAAATTTGTAATAAGTCATTAAAACCTGAATGTGGTCATTCTTGTTTACTGCTATGCCACCCAGgtCCATGTCCTCCATGTCCCAAAACAGTTCAAGTGAGGTGCCATTGTAAAAGGCAGGGTCCTAAATTACGGCGTTGCAGTAATAAGAATTGGTCATGCAACTTAAAATGTGGTAAACCATTATTGTGTGGAAAGCATTTCTGTGAAGAATCTTGTCATTTGGGTGATTGTGCTCCATGTTCTAgggaaagttttcaaaaatgtatatgtGGTCTAGAGGAAAGAAAACAGCCTTGTGCAACTCCAATATGGCAGTGTGAAAAAATATGTGGCAAGCCATACGACTGTGGATTTCATAATTGCTCCGTGAAATGCCACGCTGGAAGTTGTGGGAATTGTCCTGGGTTATTTGAAAGAACCTGCCCTTGTGGAAAATCATTACTTCAGTTACCTTGCACACAAGAAATTCCTGCTTGCAATGAAACATGTGGAAAATTACTTGATTGTAATACTCATTATTGTTCGCAAAAATGCCATAAAGGCAAATGTGGAAAGtGTCTAGAAGTAGTAGTTAAAGTTTGCAGATGCGGTCTTCATAAAAAGGAACTTCCTTgtcaaaaagaatatttatgtgaaacGAAGTGCAAACGTCAGAAAAACTGCTTACGTCATTTTTGTAAtagaaagTGCTGTGATACGGTTTGTCCACCATGCGAAAAACCATGCGGCCGTACATTGACATGCAGCAATCATAAATGTCCATCAATTTGTCATCGTGGGCCGTGTTATCCATGTCCTCAAGTAGTTGACGTCAAATGCCGTTGCGGGGGAACAGTTATTTCTGTAGCCTGTGGTCAGGAGAGGAAAGTCAAGTCTCCAAGATGTAACAAGCACTGCTTaataccTCCGAATTGTCATCATTCTTCAAGAGAAATTCATCGGTGTCATTTCGGAGAGTGTCCACCATGCCAGCAAATTTGTGGGAAAGACAGGAAAAACTGTTCACATAAGTGTCTAGCTAAGTGCCACTCCGCCGTGTggcagaaaataaatgaaaatccttGTCCGGCGGGTCCATGGGAAGCAGTGCAACCCCAGTACAAACGCTGCAGTTTGCCATGTCCAGATTGTCAGGTTCTGGTACCGGTTACTTGTCTCGGGGGTCACGAGACAAGAGACTGGCCTTGTTTCAAAGCACAATCAACCCCTTGCTCGAGAACTTGCGGTAGACTGTTAAAATGCGAAAACCATAGATGCGAAAAATTATGCCATAGCGTAATAGGAGAAGAAAATTCTCTGCTTgCAGGTGAAAATTGTTCCAAGTGCGAATTCGAATGTCTCAAGGAACGACCCAAAGGATGCAGTCATAAATGCCCAGATTCCTGTCATCCGGGAGAATGTTCTCCTTGTTctgtcaaattaaaaataaaatgccatTGTTCAGTGAGTTTTCAATACATTGATTGCAGCGATTTCCTAAACGCGGATAATGTTGGTAGGGAAAAACTTTTGTGCTGCGGTAATAAATGTCccaaaaattatccTTGTGGTCATCGCTGTAGATCTAATTGTCATTCTGGAGATTGCCCTGAGCCGGaattatgtaagaaaaaagtcaaattatcTTGTGAGTGTAAACGTATTAAAAAAGACATTCCATGCGATGTGGTAAGAAGTGAAGGTCTGAGATTTCTCACTTGTGATCAGTTGTGTCATATCAAAGtcgacgaagaaaaaaaggcAAATCAATTGGAAATGGAACAGAAAAAGTTAGATgaggagaggaaaaatcgGGAGGAAGTGGAAaagtttgagaaaaaattccatgggaagaaaaaaaacagagaCAAAGttcaatgtaataataaaaatggaaattcgaatgtccatcaaaaagaaaacgaatatGAAGTGCGGTCCTTCATACTCAAATATTGGTACATTTTGCTGGGCATTGTTGTCGCAAGCGTTGCCATTTATTATGTCCTGCAGCAatga
Protein Sequence
MSYHPGTSRERNPWTVPNLDQTSKQNSEKCQNDGEKSENKFRTAQQNIQANIQKHLEQGYESSSSEEEIEYEPILNSVFKGYSQLSGTLEGLEKIHKFLENTFQSGTGICLICIASVKRIDPIWSCMKCYGFFHLNCIQKWSRDNIFQQKQIQEDLPEFKRTNKVFWGCPKCRQKYEPSDIPQKSFCFCGKVQDPPYQPFLVPHSCGEICNKSLKPECGHSCLLLCHPGPCPPCPKTVQVRCHCKRQGPKLRRCSNKNWSCNLKCGKPLLCGKHFCEESCHLGDCAPCSRESFQKCICGLEERKQPCATPIWQCEKICGKPYDCGFHNCSVKCHAGSCGNCPGLFERTCPCGKSLLQLPCTQEIPACNETCGKLLDCNTHYCSQKCHKGKCGKCLEVVVKVCRCGLHKKELPCQKEYLCETKCKRQKNCLRHFCNRKCCDTVCPPCEKPCGRTLTCSNHKCPSICHRGPCYPCPQVVDVKCRCGGTVISVACGQERKVKSPRCNKHCLIPPNCHHSSREIHRCHFGECPPCQQICGKDRKNCSHKCLAKCHSAVWQKINENPCPAGPWEAVQPQYKRCSLPCPDCQVLVPVTCLGGHETRDWPCFKAQSTPCSRTCGRLLKCENHRCEKLCHSVIGEENSLLAGENCSKCEFECLKERPKGCSHKCPDSCHPGECSPCSVKLKIKCHCSVSFQYIDCSDFLNADNVGREKLLCCGNKCPKNYPCGHRCRSNCHSGDCPEPELCKKKVKLSCECKRIKKDIPCDVVRSEGLRFLTCDQLCHIKVDEEKKANQLEMEQKKLDEERKNREEVEKFEKKFHGKKKNRDKVQCNNKNGNSNVHQKENEYEVRSFILKYWYILLGIVVASVAIYYVLQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01308374;
90% Identity
iTF_01308374;
80% Identity
iTF_01308374;