Rmar000257.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- GATA1
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010000001.1:1725518-1728897[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4 2.1e+04 -3.9 0.0 24 30 175 181 171 184 0.74 2 2 4.4e-15 1.8e-11 44.4 6.8 1 35 270 303 270 304 0.98
Sequence Information
- Coding Sequence
- atgagtAATGTTCCGccgaaattttatgaattgtgTAGGCTATGCTTGTCACGCGACGGTGTCAAACTATCATTATTCGGTGAGGAAGCCATTTCTcgtaaatttctgtttaaaatcaTGACGTGTCTCTCAATTATGGTATCAAAAAGTGATTCATTACCACCTTCAATATGTCATCGTTGTGTTTATAAACTTGATGTTCTGCATGATTTTAGAGAAGTTTCAAGAAAATCAgaagtaatattaaaacaatatcttAACTATGCAGATCAACTTAAGAATGGGAAAACAGCAGAATTTGACTTTCATATTGATGCAGACACAGAAGAAACAGATCATTTAAATAGTAATGATAGAAGTACtctaaaaattgtattcaatGGTGATAAAGCAAAGAGCGAGAAAGATAGTATTGCATGCAatgtaaaaagagaaaatgaaggaGATGAGTATGAAGATAGTTCAGAAGAAGAAGGTCAATTAGTTATTGCGGATGAATGCCTTGAACATGATGgagaaaagaataattgtaGTATTAGGAATGCAACTGAAGAAAAGTATTATGAATTCGGTAATCGAATTTACGGAGAAAGAGAGAGGGAAGCAGCTGAAGTGTTACAAGCAATAAACAGTCAGTATTTAGGACCTCCAAAAGGCGAAGATGATGAAATCGGTGAAGAAATTCACATACCAGAATTTAGTTTACCTTCTAATGAGAGTTCTCATCTCTTTCCTAGGATAGATATtcctaatttaataaaaaaagcaaaagatttaaaatctgatATCAAGCGGGCAGATTTAAGTTGCACCAATTGCGGTACTTGTACTACAACTATATGGAGGCGTAATGCCTTGGGTGAAATGGTGTGTAACGCTTGTGGTCTATATTTTAAGTTGCATGGTGTCAATAGACCGATGAACATGAGGCGGGATACAATTCATACACGTCGCAGAAGGGCTAAAGGAGAAAAGCCCAATAGGAGAAGATCTTCGACGAATTCAGTTGGAAATGGTGAGGGTCCTGATGAAATGCTGGCTGCGTTGAGGCGACAGATCAATCCACATCTTTTACTTGCAAGTTTACACCACTCCAATCAGGTCTCTCAGCAAACACATTtgggtccTATTCAACAGCATCAGCCCCAGACCGCACACCACCAATCATCTCAACAGTCGTCGGCAAATTTGCTTAATTCAAACCAGGacggtaaaaatttcatacccATGCTTCCAGCGGGTTTGACTGTTACTACAGTTAATCCAAAGACAACTCGTCCCGCTTTCGGTTCTATTGTTCAGACTCCTCAGACTTCAGAATCTGAAGATGAAATGGATGTCAGTGATCTTCCATTAAATCTTGTTTCTACTTCATTAGGCGATGATGAAGAGTCTTAG
- Protein Sequence
- MSNVPPKFYELCRLCLSRDGVKLSLFGEEAISRKFLFKIMTCLSIMVSKSDSLPPSICHRCVYKLDVLHDFREVSRKSEVILKQYLNYADQLKNGKTAEFDFHIDADTEETDHLNSNDRSTLKIVFNGDKAKSEKDSIACNVKRENEGDEYEDSSEEEGQLVIADECLEHDGEKNNCSIRNATEEKYYEFGNRIYGEREREAAEVLQAINSQYLGPPKGEDDEIGEEIHIPEFSLPSNESSHLFPRIDIPNLIKKAKDLKSDIKRADLSCTNCGTCTTTIWRRNALGEMVCNACGLYFKLHGVNRPMNMRRDTIHTRRRRAKGEKPNRRRSSTNSVGNGEGPDEMLAALRRQINPHLLLASLHHSNQVSQQTHLGPIQQHQPQTAHHQSSQQSSANLLNSNQDGKNFIPMLPAGLTVTTVNPKTTRPAFGSIVQTPQTSESEDEMDVSDLPLNLVSTSLGDDEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -