Rmar006141.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- -
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010000009.1:2374266-2378081[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.9 1.2e+03 1.3 0.3 1 23 123 145 123 145 0.86 2 12 0.0014 0.24 12.9 3.1 1 23 340 363 340 363 0.97 3 12 4.3 7.4e+02 1.9 3.2 3 23 420 439 419 439 0.93 4 12 0.018 3.1 9.4 0.3 2 23 447 468 446 468 0.89 5 12 0.17 29 6.3 0.5 2 23 475 495 474 495 0.94 6 12 1.7e-05 0.0029 18.9 1.9 1 23 500 522 500 522 0.97 7 12 0.0012 0.21 13.1 2.3 3 23 541 562 540 562 0.96 8 12 3.4e-05 0.0057 18.0 0.3 1 23 573 596 573 596 0.96 9 12 0.00075 0.13 13.7 0.3 2 23 616 638 615 638 0.95 10 12 2.6e-06 0.00044 21.5 1.0 2 23 651 673 650 673 0.94 11 12 0.00054 0.093 14.2 1.8 2 23 680 701 679 701 0.97 12 12 8.9e-05 0.015 16.7 1.5 1 23 707 729 707 729 0.98
Sequence Information
- Coding Sequence
- ATGATAAAGTCAACAAATATTGCTTTGGACAAAAAGTTTTCTGATGAAAACATTATTGTAACCAATAGCCCaggacagaaaaaaattaactgcagACTATGTGATAAGGATATTACTGGTAAAGAATGCCAATTGCTCtatgatgaaaaagaaaaggtagAAACAAGGCTTGgtcgaaaaataaacataataataaattcaacagAAACTCAATCAAACTTATCACAATATTGCTGCAGTGTGTGCACTTCCAAAATAGAAATTTGTTTCAGTCTTCTTGTTGAAATTCAGGCTTCAGATGAAGTGATAAAGCAAACATATGAACATTTATCAAATGGTGTATCAGTTGATACAAGCACTCAAGTTTTCATTTGTGGGGAAtgtaaaagtataattaaagGAATTAAGTCTTTTATCAGACActatgaaaatcatattttaaaaaagacagTGATAAATTCgaagaaagatttaaaactttctcaGATAGTCCCCTGCTACTCAAATGATGACCAAAAGGTGATTAATATTGAAGCAGATAGTATTGATATGGATCTAAAGTTAAATAACATGGAGAGAGGTGATGTAATGAAGGAAGGTACAATTTACGAGGCTGAGACAAATGACAGTGCTAAAGCGCATTacagagaaaaaattgatagaaattttaaaataaagaaaaatgatcataaaaaattattgaactgCGAATTTAATGTGTCCAGTGacgaattttatgaaaaaaataccgATATAGAGGATCATGATCTTGATGTTGATTTGCTGACTTCGGATAACGAATTTAACATTTCGCCCGATTCGGATCACGAAAATGATGGCGACATTGCTCCCTCTATAGATAAAGAAGCAGACACAGAAGATTTTTCCGAAACAAATACTTCTATATCGAGTGATACAAGCTATCAAAAATTAGTGGATatcgtaaaaaaagaattggaaaaatcaGATTCAGAAGAAGATCCTAATatggaattaataataaatgaagatgGAAGCTATTATTGCAGCACATGTAATCAGGCATTTGAGTACAAGTTTTTGTTAGTtcatcatttaatgaaaaatcacaaATGGCCTGGATTGGCTGATGAATCGGGCTCTGATGCCATCAAAATAGAATTAGATGAAGACAGCTGCGTTCATTGTCCTCAGTGTCAAGAACTTATTCTTTCTTCAGAAATTGAGAAACACTTGTCTGAATGTGGTGGACAAATTATGGAATCGGGTGATATTTTATGTCATTCATGCGGGAAATTGTACACTTATAAACAATGGGCCActcataaaaagaaacacaTGAGTCATGCAGCAATGTGGTCTTGCGAACTATGCGGTAAAAGATTCAAGGCGAAAAGAATATTAAGAAGTCACCTTGGTGAACATGATGAGAGTAAGAAAAAAGTATGCGAAATTTgtggtaaaaaattattgccttTGTCATTTTTTAGCCATATGATGAAGCACAAAGAGAAGAGGCATGTTTGTCAGTTTTGTGGAAAGGGTTTCACTTATAATTACGGTTTGAGAATGCATTTAAAAGTTCACGAAGGATCCGAGAGAATCGAGCCGAAACCAGGCAAGAAGAGAGATAAAGTATTTTGTTGGTtatgtaaaaaagattttgatagTTCTTCGGCTTTgcacaaacatttaaaaaatgaacacAATACAGAGGGCGTGGAGCAGGATTCTCGTTTTTCATGCTCagaatgtgataaaaaatttgctgacATGTTTGGGTTGAAGgctcatttgaaattaattcacgAAATGAAAGATGAAGAAATATCGAGGTTCAAATCTCTGCCAGTTTATAGATATATCGAATGTAATGTTTGCAATCAAGTCTTTAACAGTGAAAACAAAGTCAGAATTCACATGAAACAGGATCACGGATTAAAACCTttcgaaatggaaatattaaaaaaggaatgtgAAAAATGTGGTAAACGCTTTGCaagcaaacaaaatttaattcatcacATTAATGGGgctcatttaaatattaagccTATGCAATGCGACATATGTAACGAAAGATTTGCAAAACATTCTTCCTTAATATATCACAAACTGCGGCATTCTGGAGAGAAACCTTTTCAGTGTgaattcTGTCAAAAAACGTACAGACAAAGAAATGATGTTATTCGTCATTTGGCGAGACACGTTCGGGATCAAGAACTTACTTTGGAAGAGGCCTCGGCCATTAACAACAGTCCTTCACCATTAGTATTAAAGCGACGAATATTTCTGAAGGATTCCAGTATCAGTTATCAAGCTCTGGTCAGTAGAAATCGAAGACAGAAAGCCGAAATTGTTGAGGTAGATCCCATGCCTATTGCAGAAACAAAAATAGAATATGATGAAGGGTCCTTGATTTACGTCGAAGAAGTGATGGCGGATGAGATTCAGCAACCCGAAAGTCCtacagaaattaaatacatgACTGTTAAACCCGTGTACAATGAAGAACGgaatacaataattttgtcCAGCccggaattatttaaaaacgcaGTGGAAAACATGAGCTACAGATATGTGACTCCGCAAATGAAAGATATTCCTGCAGtaattgtgaaaaaagaaactgatatGTAA
- Protein Sequence
- MIKSTNIALDKKFSDENIIVTNSPGQKKINCRLCDKDITGKECQLLYDEKEKVETRLGRKINIIINSTETQSNLSQYCCSVCTSKIEICFSLLVEIQASDEVIKQTYEHLSNGVSVDTSTQVFICGECKSIIKGIKSFIRHYENHILKKTVINSKKDLKLSQIVPCYSNDDQKVINIEADSIDMDLKLNNMERGDVMKEGTIYEAETNDSAKAHYREKIDRNFKIKKNDHKKLLNCEFNVSSDEFYEKNTDIEDHDLDVDLLTSDNEFNISPDSDHENDGDIAPSIDKEADTEDFSETNTSISSDTSYQKLVDIVKKELEKSDSEEDPNMELIINEDGSYYCSTCNQAFEYKFLLVHHLMKNHKWPGLADESGSDAIKIELDEDSCVHCPQCQELILSSEIEKHLSECGGQIMESGDILCHSCGKLYTYKQWATHKKKHMSHAAMWSCELCGKRFKAKRILRSHLGEHDESKKKVCEICGKKLLPLSFFSHMMKHKEKRHVCQFCGKGFTYNYGLRMHLKVHEGSERIEPKPGKKRDKVFCWLCKKDFDSSSALHKHLKNEHNTEGVEQDSRFSCSECDKKFADMFGLKAHLKLIHEMKDEEISRFKSLPVYRYIECNVCNQVFNSENKVRIHMKQDHGLKPFEMEILKKECEKCGKRFASKQNLIHHINGAHLNIKPMQCDICNERFAKHSSLIYHKLRHSGEKPFQCEFCQKTYRQRNDVIRHLARHVRDQELTLEEASAINNSPSPLVLKRRIFLKDSSISYQALVSRNRRQKAEIVEVDPMPIAETKIEYDEGSLIYVEEVMADEIQQPESPTEIKYMTVKPVYNEERNTIILSSPELFKNAVENMSYRYVTPQMKDIPAVIVKKETDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308256;
- 90% Identity
- iTF_01308256;
- 80% Identity
- iTF_01308256;