Basic Information

Insect: Ricinus marginatus
Gene Symbol: -
Assembly: GCA_028565995.1
Location: JAOWBB010000012.1:465782-471142[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.011 1.9 10.0 1.0 1 21 502 522 502 524 0.90

2 16 0.13 22 6.7 1.3 2 21 541 560 540 561 0.90

3 16 1.3 2.2e+02 3.6 4.2 3 23 577 597 575 597 0.82

4 16 0.0042 0.71 11.4 0.2 2 23 604 626 603 626 0.95

5 16 0.00013 0.022 16.1 1.0 1 23 659 681 659 681 0.98

6 16 0.0069 1.2 10.7 3.0 2 23 693 715 692 715 0.93

7 16 0.0002 0.033 15.6 0.5 1 23 731 753 731 753 0.98

8 16 0.0013 0.22 13.0 0.5 1 23 763 786 763 786 0.97

9 16 0.0057 0.97 11.0 0.5 1 23 792 814 792 814 0.99

10 16 0.0058 0.98 11.0 1.2 1 23 829 851 829 851 0.98

11 16 0.00071 0.12 13.8 2.0 1 23 857 879 857 879 0.98

12 16 0.00063 0.11 14.0 0.2 1 23 885 907 885 907 0.95

13 16 0.0045 0.77 11.3 4.3 1 23 913 935 913 935 0.97

14 16 0.0008 0.14 13.6 2.4 1 23 941 963 941 963 0.96

15 16 0.0007 0.12 13.8 3.3 1 23 969 991 969 991 0.97

16 16 9.3e-05 0.016 16.6 0.8 3 23 999 1020 998 1020 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.011	1.9	10.0	1.0	1	21	502	522	502	524	0.90
2	16	0.13	22	6.7	1.3	2	21	541	560	540	561	0.90
3	16	1.3	2.2e+02	3.6	4.2	3	23	577	597	575	597	0.82
4	16	0.0042	0.71	11.4	0.2	2	23	604	626	603	626	0.95
5	16	0.00013	0.022	16.1	1.0	1	23	659	681	659	681	0.98
6	16	0.0069	1.2	10.7	3.0	2	23	693	715	692	715	0.93
7	16	0.0002	0.033	15.6	0.5	1	23	731	753	731	753	0.98
8	16	0.0013	0.22	13.0	0.5	1	23	763	786	763	786	0.97
9	16	0.0057	0.97	11.0	0.5	1	23	792	814	792	814	0.99
10	16	0.0058	0.98	11.0	1.2	1	23	829	851	829	851	0.98
11	16	0.00071	0.12	13.8	2.0	1	23	857	879	857	879	0.98
12	16	0.00063	0.11	14.0	0.2	1	23	885	907	885	907	0.95
13	16	0.0045	0.77	11.3	4.3	1	23	913	935	913	935	0.97
14	16	0.0008	0.14	13.6	2.4	1	23	941	963	941	963	0.96
15	16	0.0007	0.12	13.8	3.3	1	23	969	991	969	991	0.97
16	16	9.3e-05	0.016	16.6	0.8	3	23	999	1020	998	1020	0.94

Sequence Information

Coding Sequence: ATGGaagaagataataataattttattatagtaCTCAAAAGTGGAAGTGGTGAATCAATCAGTGTTGAAGTGTTCCCTGAAGACACAGTCAAGGATCTAAAACAACGCATTGAGTCACAAGTCGGCATTCCATTAGATTTTGATGAGATTAAAGTAGATGGAAAGAGTTTTAATGATGATACCaacattttagaatatttttctccagAAATAGCATCTCAAATAGATCAAGAAACAGAGGACAATGAAAGAgttcaaataaataactacAATGATcaggaaatggaaataatagAGACAGTGGAGGAATTCATAATTTCAGATCCACCTTCAATGTCTTCTGTTTTGCTAAGTCGAAACAATTCCAATAGAATTGATTCAGTTCCAAATTCTTTGTTTTGTGCTGCAGCAGGAtgtaaaacaaacaaattagACAATCCAGATGTTCCTTTGTTTAAATTTCCTGCacagaaaaaaagGTGTCAGCAGTGGCTTCAGATCGTGCAAAGAGAGGAATTAAGTAACCAGTCGCTCGGATATATAAGTCACCATCTTTATTTGTGCGCCAAGCACTTTTCCAAGGATCAGTTTGCCACAAAGGATCATCAAATACTAAAGCAGAATGCCGTCCCCTATCTTACGATCCCGGAATCTCTCGAGACAAATGAAGTTGCAGATGAAGGTATGAGCATTCCAGCGATCAACACGTTTACAGATCACGTTGTAAAAGAGGAATATCCAATGGAGGAAACAGAAGAGGATGCCGAACCGGAGAATCCCGGGAAAATGTGTCGCTTATGCGGTAATCCCCTAAATGCCATCGCTTCTCTGTTTATATTTAGCGATGACGGCGAACGGGAATGTTTGGcggaaaaaatcaattcatgTCTACCTATTTCcGTTCGGAAAACTGATCCGCTTCCGAAGCAGATTTGCACGGAATGCgctaaaaatcttgaaatggTGCACGCGTTTGCCGAATCCTGCATCAAGGCTGAATTGAAACTTAAGGCActaacaaaaagatttttGGTACATCAACTGAAGAAATCCAAATCTGAAGACAAAAATTGTCAGTCATCAGATCAGAAATCGCTTTGTTGCCCGCTTTGTCGCGAAGGCAGCATGAAATATCGTGGAAATAACGAAGAAGCGAAGATTCAGAATGTGGTTTGCATAAAAAAGCAGCCAAACGAAGACTCACTGGAATTGCCGACGGGTTTATTGCCCATAAGCGAATTCGAACCGGAAGATTCAAGCCACGATTTACTCGCGGGTCTCTACAGCGAAGATGACGAGGACGACGCTTCGGATTTCGAAAACGTTATGCCGCAGGAGAAGGATCACGGAGaggaaggaaatgaaaaaagcgaAGTTTCCGAGTCCATTTATCTGGAAGAGGATCGAATGGAAATGTATTATGATTGCAGCATTTGCGAAGAGAATTTCCTGTCTCCTAACGAATGCTTCGAACACTGCAAAAGTCATGCTTCCGCAGACAATTACCCCTGTTTGGTGTGCGGACTGTGTTTCGCGaccgaagaaaaattcaagctTCATTTCGGGGAGCACAAGAACAAAATCAACAACATCAGAAAGATCAATTTCAAACCTTTGCTCGAATGTGGTGcctgtaatataaaatttactacaAAGAAGGATTTTATACTCCACAAATGCAGAAGCCCCATACTAAAGGTGCTGCAAAACGATTTCAACAACATGTGCTGCCCAATTTGTTACAGATGCTTCAAATCGAATGAGAGGGCAGATCTGCATCGCTCTTACCACGAAGGAGCAGAGAAGTTGACTTGCGAGTTGTGCGGGAACGAattcgaaacggaaaaatctCTTAATTATCACACGGCGACGATTCACCAAAATGAGGGACCCGCTGCCTGTCAACACTGTGCGTTGAAGTTCTATTCGAAGGAACACTGTGCAAAGCACGAAAAAATACACGAGTTCACAACGTATCAGTGTTCCCTGTGCAGCAAGACTTTCAAGGATTTGGATAAGATTACTAGTCACATCGAAAATCATAGAATTaaccaaatggaaaaaaagtacGAACTGCAGTGTTCCAAGTGCGACCtgcaatttgcaaaaaaatctcACTACTTTTATCATTTAGAGAATTCACATGAGGGTGACATGAATAACTTGAAAAGGATGCCTTCTTTAATACAGTATCAGTGCAAAATCTGTTCCGAACGCTTCACGTCGTCCCAGGACGTGATCATACATCGAACGGTTCATTGGAAGAGCTACGACTCGTATCTGCCCCACGTGTGCGAATATTGCGGAGAAGCCCATTCTAGTCCGAACGCTCTCGCCAGACATCGGAGAATCCTTCATCCGGACGAGCATCCCTATGTGTGCACGATATGCGAGGTGAAAACGAGGACTCTTTACGAGGCGAGGGTTCACAGGAAAACCCACACGGGCTACGTTAACGCACCTCAGAAACCGCAATCTAGAATTTACCAGTGCGACAATTGTCCGAGCCTCTTCTCCGACAAGGTCTCCTTCCTCTCACACAAGAAATCCCATAAGGTGACCAAGGGCTACCAGTGCGAATTTTGCGAGAAGATCTTCCCCGAGAAGCACAGGCTCATCGTTCACAGGCGACAGCACACCGGGGAGAAACCTTTCTCGTGCGGTGTCTGCGGTAAAAAGTTCGCCCAAACCTCGGCGATGTATACCCACGCCCTCCTGCACACGGGGGAGACTCCACACTCGTGCGATTTCTGCGGACGAAGGTTCCGCATCAAGTCCGACCGGGACAATCACAGACGGACCCACACGGGAGAGAAACCTTATAAGTGCCAGTATTGTGATAAAAGCTTCCGAACGGGTCAGGTCTACTACCAACACAGGATGATACACACCGGAGAGAGGAGATTCCCCTGCGATGTCTGCGGTCGAGCGTTCAAACGCTCTCACACTCTTGTCTGTCACAAGAGAATACACACGGGAGAAAAGCCGAACATCTGCGACGTCTGCGGGAAGGGGTTCAGGCAGAGGACGGATATGAGGAAGCACAAAATGAACCTCCACGGAGTTCCGGCATAG
Protein Sequence: MEEDNNNFIIVLKSGSGESISVEVFPEDTVKDLKQRIESQVGIPLDFDEIKVDGKSFNDDTNILEYFSPEIASQIDQETEDNERVQINNYNDQEMEIIETVEEFIISDPPSMSSVLLSRNNSNRIDSVPNSLFCAAAGCKTNKLDNPDVPLFKFPAQKKRCQQWLQIVQREELSNQSLGYISHHLYLCAKHFSKDQFATKDHQILKQNAVPYLTIPESLETNEVADEGMSIPAINTFTDHVVKEEYPMEETEEDAEPENPGKMCRLCGNPLNAIASLFIFSDDGERECLAEKINSCLPISVRKTDPLPKQICTECAKNLEMVHAFAESCIKAELKLKALTKRFLVHQLKKSKSEDKNCQSSDQKSLCCPLCREGSMKYRGNNEEAKIQNVVCIKKQPNEDSLELPTGLLPISEFEPEDSSHDLLAGLYSEDDEDDASDFENVMPQEKDHGEEGNEKSEVSESIYLEEDRMEMYYDCSICEENFLSPNECFEHCKSHASADNYPCLVCGLCFATEEKFKLHFGEHKNKINNIRKINFKPLLECGACNIKFTTKKDFILHKCRSPILKVLQNDFNNMCCPICYRCFKSNERADLHRSYHEGAEKLTCELCGNEFETEKSLNYHTATIHQNEGPAACQHCALKFYSKEHCAKHEKIHEFTTYQCSLCSKTFKDLDKITSHIENHRINQMEKKYELQCSKCDLQFAKKSHYFYHLENSHEGDMNNLKRMPSLIQYQCKICSERFTSSQDVIIHRTVHWKSYDSYLPHVCEYCGEAHSSPNALARHRRILHPDEHPYVCTICEVKTRTLYEARVHRKTHTGYVNAPQKPQSRIYQCDNCPSLFSDKVSFLSHKKSHKVTKGYQCEFCEKIFPEKHRLIVHRRQHTGEKPFSCGVCGKKFAQTSAMYTHALLHTGETPHSCDFCGRRFRIKSDRDNHRRTHTGEKPYKCQYCDKSFRTGQVYYQHRMIHTGERRFPCDVCGRAFKRSHTLVCHKRIHTGEKPNICDVCGKGFRQRTDMRKHKMNLHGVPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01308740;
90% Identity: iTF_01308740;
80% Identity: iTF_01308740;