Basic Information

Insect: Ricinus marginatus
Gene Symbol: Clamp_1
Assembly: GCA_028565995.1
Location: JAOWBB010000007.1:1209627-1213136[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.1e-05 0.0018 19.6 1.7 1 23 181 203 181 203 0.99

2 8 7.3e-05 0.012 16.9 0.2 1 23 239 262 239 262 0.94

3 8 6e-06 0.001 20.3 1.1 1 23 381 403 381 403 0.98

4 8 0.00012 0.021 16.2 2.0 1 23 409 431 409 431 0.98

5 8 5e-06 0.00085 20.6 1.7 1 23 437 459 437 459 0.98

6 8 2.1e-07 3.6e-05 24.9 1.9 1 23 465 487 465 487 0.99

7 8 3.1e-05 0.0054 18.1 2.3 1 23 493 515 493 515 0.98

8 8 9.2e-06 0.0016 19.8 0.4 1 23 521 543 521 543 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.1e-05	0.0018	19.6	1.7	1	23	181	203	181	203	0.99
2	8	7.3e-05	0.012	16.9	0.2	1	23	239	262	239	262	0.94
3	8	6e-06	0.001	20.3	1.1	1	23	381	403	381	403	0.98
4	8	0.00012	0.021	16.2	2.0	1	23	409	431	409	431	0.98
5	8	5e-06	0.00085	20.6	1.7	1	23	437	459	437	459	0.98
6	8	2.1e-07	3.6e-05	24.9	1.9	1	23	465	487	465	487	0.99
7	8	3.1e-05	0.0054	18.1	2.3	1	23	493	515	493	515	0.98
8	8	9.2e-06	0.0016	19.8	0.4	1	23	521	543	521	543	0.98

Sequence Information

Coding Sequence: ATGTCTGTAAATACTGGATGGCTGCCACAGACATCAAGGACAGATCAACAACATCTTGGAAATGCTATAGTAATAAAAGCAGAAgatcaacatttatttttacagacaACTGATGTTACTGGCCAGCAAAGGGGccttataaaaattccaactGGATCTGTTGTTGGGAAATGTTCTATGTTTACCCAAACAGAGCCCACTAAcaggTTTACTCAAACAGAATCAAATCCAGTTACCTATAGAGCAGATGGAACAAGAAATAACGAAACAACCACAACTGCCATAGCTATGTTTGAACCAAGTCAGGTCCAACCTCAAGTTTATATAGCAACAacagtggaaaaaaaagatccagattgcaaaactgaatttccattttgttaTAATGTGAATATGATTCAAAAAGTTCCAgTTCAAACCACTACTGGTACAACAGTTGGTACAGCAGTTGTAGATGATAAGGGTTGTTACCGGTTAGATGTTGGTCAacctttttcatataattatgcTTTAGTCAATCAGATGTCATTAGCAACCACTTTTAAATGTGATGTATGTGGCTTAGCTTTTGCACATATTTCATTACTAAACCATCATAAACGCATTCATACACAAAATTCGAATTCAAATCAGCAGTTACAACAACAGAATAATGACCAACAGGCACAGCAACAATCACAACAACAAAATCAACCTCAACAGCAAAATAGGCAATATAATTGTGACATATGTGGAATGTCATTTAATTTGTCTGGTGAACttaaaagtcataaaaatgCACTTCATAAAGATCatcaagttacaATGAGCGAACCAGAACCAAAAATATCAGTCACTAGGTCTTGTGAAATTTGTGGTTTGGAAGTAACATTAAATCATATAGCTGggcttaaaagaaaaaaatttaaatgttctaaTTGTTTagagatTGAAAATACAGCAAATAGTTTCGGTAATAACGGAGCCAACTCAGGGGGAGGATCTTCAGCAACTAATAGTACAACAGGGCCAAAACCTGGGCATCATCcagtaaaaaaaagaggatTGCCTTGCGTCACTAAATGTCAGCAATGCAATGGAtcgggaataatttttattggcggctcaaaaaatcataaaataaataattcggaAAAGACTTTTACGTGCAATATATGTGATGGAACATTTTCTCgATACTCAAGTTTGTGGTCCCATAAGAGATTACATACTGGTGATAAACCATTCAAATGTTTACGATGTGGGTTGTGTTTCGCAAAAGCTGCTTACCTCAAGAATCATAGTAGGGTTCATACGGGtgaaaaaccatttaaatGCGGTACATGTGGAATGCAGTTCTCTCAATCCCCTCATCTCAAAAATCATGAACGAATACATAGTGGCGAACGGCCATATCAGTGCGAGATTTGTGAAAAGACTTTTGCTAGGCATTCTACTCTCTGGAATCACAGGAGAATACATACTGGCGAAAAGCCATATAGATGTAATGTTTgcgattcaaaatttaatcaagcaacgcatttaaaaaatcacgCTAAGGTTCATACCGGAGAAAAACCCTTTAAATGCGATATTTGTGAAGTTAGTTTCGCCGATAGATTTGCTCTCAAAAGGCACAGAAGTGTGCATGAGAAATATGGCAGAACTTCAGCCAACCAAACTAGTAatcaagGTAATGCCAATTCTGTGAATCCCAATGCTCCAGTCACTGTGAATCACACTATGGGgccaatatttaaatgtgaagTACCCTGTGATCCTTGTGACGTAGCATTTCCTGGTTGTTCTCGTAGTCAAGATTCCAAaccataa
Protein Sequence: MSVNTGWLPQTSRTDQQHLGNAIVIKAEDQHLFLQTTDVTGQQRGLIKIPTGSVVGKCSMFTQTEPTNRFTQTESNPVTYRADGTRNNETTTTAIAMFEPSQVQPQVYIATTVEKKDPDCKTEFPFCYNVNMIQKVPVQTTTGTTVGTAVVDDKGCYRLDVGQPFSYNYALVNQMSLATTFKCDVCGLAFAHISLLNHHKRIHTQNSNSNQQLQQQNNDQQAQQQSQQQNQPQQQNRQYNCDICGMSFNLSGELKSHKNALHKDHQVTMSEPEPKISVTRSCEICGLEVTLNHIAGLKRKKFKCSNCLEIENTANSFGNNGANSGGGSSATNSTTGPKPGHHPVKKRGLPCVTKCQQCNGSGIIFIGGSKNHKINNSEKTFTCNICDGTFSRYSSLWSHKRLHTGDKPFKCLRCGLCFAKAAYLKNHSRVHTGEKPFKCGTCGMQFSQSPHLKNHERIHSGERPYQCEICEKTFARHSTLWNHRRIHTGEKPYRCNVCDSKFNQATHLKNHAKVHTGEKPFKCDICEVSFADRFALKRHRSVHEKYGRTSANQTSNQGNANSVNPNAPVTVNHTMGPIFKCEVPCDPCDVAFPGCSRSQDSKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00362765;
90% Identity: iTF_01308208;
80% Identity: iTF_01308208;