Basic Information

Insect: Ricinus marginatus
Gene Symbol: -
Assembly: GCA_028565995.1
Location: JAOWBB010008131.1:11998-13608[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0001 0.017 16.5 1.4 1 23 90 113 90 113 0.95

2 15 0.0024 0.4 12.2 1.5 2 23 120 141 119 141 0.96

3 15 0.011 1.9 10.1 0.4 2 21 148 167 147 168 0.90

4 15 0.24 42 5.8 0.5 1 21 175 195 175 196 0.90

5 15 5.4 9.2e+02 1.6 0.0 6 19 207 220 206 223 0.90

6 15 4.5 7.6e+02 1.9 4.9 1 23 227 249 227 249 0.96

7 15 0.0069 1.2 10.7 0.6 1 23 255 278 255 278 0.95

8 15 6.4e-05 0.011 17.1 0.8 1 23 296 318 296 318 0.93

9 15 2.1e-05 0.0036 18.6 0.9 2 23 322 342 321 342 0.95

10 15 0.00024 0.04 15.3 0.2 3 23 349 370 348 370 0.98

11 15 0.00038 0.064 14.7 0.6 2 23 376 397 375 397 0.98

12 15 0.00077 0.13 13.7 0.0 3 23 411 432 410 432 0.95

13 15 0.0011 0.19 13.2 0.4 1 23 444 466 444 466 0.99

14 15 1.1e-06 0.00018 22.7 0.6 1 23 473 496 473 496 0.93

15 15 7.2e-06 0.0012 20.1 1.8 3 23 509 530 507 530 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0001	0.017	16.5	1.4	1	23	90	113	90	113	0.95
2	15	0.0024	0.4	12.2	1.5	2	23	120	141	119	141	0.96
3	15	0.011	1.9	10.1	0.4	2	21	148	167	147	168	0.90
4	15	0.24	42	5.8	0.5	1	21	175	195	175	196	0.90
5	15	5.4	9.2e+02	1.6	0.0	6	19	207	220	206	223	0.90
6	15	4.5	7.6e+02	1.9	4.9	1	23	227	249	227	249	0.96
7	15	0.0069	1.2	10.7	0.6	1	23	255	278	255	278	0.95
8	15	6.4e-05	0.011	17.1	0.8	1	23	296	318	296	318	0.93
9	15	2.1e-05	0.0036	18.6	0.9	2	23	322	342	321	342	0.95
10	15	0.00024	0.04	15.3	0.2	3	23	349	370	348	370	0.98
11	15	0.00038	0.064	14.7	0.6	2	23	376	397	375	397	0.98
12	15	0.00077	0.13	13.7	0.0	3	23	411	432	410	432	0.95
13	15	0.0011	0.19	13.2	0.4	1	23	444	466	444	466	0.99
14	15	1.1e-06	0.00018	22.7	0.6	1	23	473	496	473	496	0.93
15	15	7.2e-06	0.0012	20.1	1.8	3	23	509	530	507	530	0.97

Sequence Information

Coding Sequence: aTGAAATCTTTTAAGCAGAAGGAATtggaaacatttgaaaattcagaaattggTATTTCTGATTGTAAAGGCGAAGTGAAACTTGATCATATTCATAATCTAGACTCAAGTAAGAGTGCTGATAATAATCATATTACTCCACCTTCTCAAATAGTAGATAATGAGGTGGAAGAAACTGATGCCTTTGATCAAATCTTTGGGAAACAGAAGcgttcttataaaaaaaaatctctgttagaaaaattagaagaggaaaagactaaaatatttaaatgtcaagATTGCTCCAAATCCTTTAATAAGAACTCTAGCTTGATATTTCATGTCAAAGTCGTTCATGAAAAGCGAAGAAACATAAAGTGCCAAATCTGTTACGAAGAATTCACGtccaaagaattttataagagTCATACAACCATGCATGGACCTGAAGACAAAGTTGTCTGCAAAGGTTGTAAAAAAGTATTCGACTCAATGAAATTGTATCATGCCCATGCTAAGCAAAATCCGGGTGTTCACTGTTTTCTCTGCAAGCTTTGCCTCCGTAAATTCCCGTCAGAATTACTTTTGGAACAACACGTCTGCATTAATCAAAATGGAGAGCCTCTACATTGCGCTTGCGGAATGGAGTTCACGAGATATCAGGACGTAATAATTCATTCTAAGGGTACAAAACCTTTCCATTGTTGTAGCTGCTCCCAGCTTACGGTATCTCTGACGGCTTATATACGCCATTTACGAAAACATTCGAAACAAAAACCATACCAGTGCACCAAGTGTGACATGAAATTCGcaattattgattttctaaACATTCACAATAAGCGGGAACACAAAGAAGACGACAGTGAGAAAAAATGTGATAATAATAAGTCACTAACGTGTCATAAATGCACAAATTGCGATGAAGAATTCCCTACCGCCGAAGATCTAAAAAAACACAGTTCCGCTCATGAAAGAGTACAATGTCCCGACTGCGGGAAATCTTTCAGGAGAAACCGATTGGAGAACCATCGCAACTCACATAAAAAATCCGCAAGTTTATGCCCCGAatgcggaaaattatttgacgcCAGATTTAAATTGACGCAGCATATGATAACCATACATAAGGCGGAACCTGTAAAATGCGATGTGTGTGAGAAGGTATTGAAGaccaaaaaaatacttaacgAGCACATGAAAACTCATCTCAAAACAGAAATCGGTCTTCGGATTCCTCAAGCAATTTGTCCCAAATGTGGTTTAGGATTGGCTCAAAAAGGAAGTTTAGCTAGGCATATTTTGCTTGTgcatgaaaaacataaaatagtACCAAATGACAAAACCTATACTTGTCCCGAGTGCTCGGAAATTTTGCcgaacaaaggaaaatattatagtCATACAAGAATGCACAGAGCGATGGTGGACAGATTTCCATGCGACATATGCGGCCGGGAATTCaataaaaagcagaatttAAGAAGACACATTTATTTGCTTCATGacgaaaaaagaattgttgGATCTCCAATTTACGGCTGTCAAATTTGTACAAGATCattcagggaaaaaaaaaatttaaggcgtCATTACAAAATGGTGCACAAAATGGATGATTTCTGCTAA
Protein Sequence: MKSFKQKELETFENSEIGISDCKGEVKLDHIHNLDSSKSADNNHITPPSQIVDNEVEETDAFDQIFGKQKRSYKKKSLLEKLEEEKTKIFKCQDCSKSFNKNSSLIFHVKVVHEKRRNIKCQICYEEFTSKEFYKSHTTMHGPEDKVVCKGCKKVFDSMKLYHAHAKQNPGVHCFLCKLCLRKFPSELLLEQHVCINQNGEPLHCACGMEFTRYQDVIIHSKGTKPFHCCSCSQLTVSLTAYIRHLRKHSKQKPYQCTKCDMKFAIIDFLNIHNKREHKEDDSEKKCDNNKSLTCHKCTNCDEEFPTAEDLKKHSSAHERVQCPDCGKSFRRNRLENHRNSHKKSASLCPECGKLFDARFKLTQHMITIHKAEPVKCDVCEKVLKTKKILNEHMKTHLKTEIGLRIPQAICPKCGLGLAQKGSLARHILLVHEKHKIVPNDKTYTCPECSEILPNKGKYYSHTRMHRAMVDRFPCDICGREFNKKQNLRRHIYLLHDEKRIVGSPIYGCQICTRSFREKKNLRRHYKMVHKMDDFC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01308182;
90% Identity: iTF_01308182;
80% Identity: iTF_01308182;