Basic Information

Insect: Ricinus marginatus
Gene Symbol: ham
Assembly: GCA_028565995.1
Location: JAOWBB010000013.1:2398528-2403084[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.023 3.9 9.1 0.1 3 23 30 51 29 51 0.94

2 9 0.0041 0.69 11.4 0.2 1 23 58 81 58 81 0.96

3 9 1.6e-08 2.7e-06 28.4 4.4 1 23 87 109 87 110 0.96

4 9 6.9e-06 0.0012 20.2 1.7 1 23 116 138 116 138 0.95

5 9 3e-05 0.0051 18.2 4.1 1 23 144 166 144 166 0.99

6 9 0.00022 0.037 15.5 1.3 2 21 174 193 173 194 0.95

7 9 4.7e-08 7.9e-06 27.0 0.5 3 23 616 636 614 636 0.98

8 9 4.1e-07 7.1e-05 24.0 1.4 1 23 642 665 642 665 0.97

9 9 3.5e-06 0.00059 21.1 3.5 1 23 671 693 671 693 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.023	3.9	9.1	0.1	3	23	30	51	29	51	0.94
2	9	0.0041	0.69	11.4	0.2	1	23	58	81	58	81	0.96
3	9	1.6e-08	2.7e-06	28.4	4.4	1	23	87	109	87	110	0.96
4	9	6.9e-06	0.0012	20.2	1.7	1	23	116	138	116	138	0.95
5	9	3e-05	0.0051	18.2	4.1	1	23	144	166	144	166	0.99
6	9	0.00022	0.037	15.5	1.3	2	21	174	193	173	194	0.95
7	9	4.7e-08	7.9e-06	27.0	0.5	3	23	616	636	614	636	0.98
8	9	4.1e-07	7.1e-05	24.0	1.4	1	23	642	665	642	665	0.97
9	9	3.5e-06	0.00059	21.1	3.5	1	23	671	693	671	693	0.99

Sequence Information

Coding Sequence: ATGCCTACCGTTCTTTTTTCCGCGGAgCATTCGGGAACCTCAGAAGATGATCGAGAGGACATCGAGGACGAGGAGAACGAGACCCTGTGCGCGGTGTGTAACAAGGTCTACCGGGATATAGAACAGTTGGACGACCACTTGGTCAGGACACACAGATATCCGTACGAGCATTACAAGTGCGATAGATGTCCCAGAGCTTTCTCCTGGAGACCGGGCTTGCTTCGTCATCAAACGATCACCCACGGAAAAGTGAGGAAGTTCACTTGCGAAAACTGTCACAAAATATTCACAGATCCGAGCAATTTGCAACGTCATATAAGGACACATCACATAGGAGCTAGATCTCATGCATGTGCCGAATGCGGCAAGACGTTCGCGACCTCTTCGGGACTCAAGCAGCACACCCACATCCATTCCAGCTTTAAGCCGTTCCAGTGTGAAGTCTGCCTTAAGGCTTACACGCAATTTTCCAACTTGTGCCGTCACAAGCGAATGCACGCCGACTGTCGGCTGCAAATTAAATGCGGTAAATGCGGACAATCCTTCAGCACTTTTACGTCACTCTCGAAGCATAAGCGATTTTGCGATTCGACGTCGTCTCCTGCAGCAGGAGCTGCAGCTCTGCCGATATCGCAGTCCTCGCCGACGATGAACCTTCAAGGGAACTCTCCCGGCAATCCCGTGTTCATCTACCCCGGACACTCCTCCGCCCTGCCGCTCTACCACTCGTCTCTGTTAGATCGTTATCCTTCTCTGTTTCCTCCGGGCAGCCCCGCGACCCCGTACATGAATAATTCAATCCTCTTTCAAACGTCCGCTCGTCTCAAGGCTGAAGATACCCCAAAAATAATGGGAAATACGTCTCCGGATTACCAACAGCGTATGCAGCGCAAAAGATTGTATTCGAACGAAAAGGAACGTTCGATATCGCCCGTCGAtaagaaagggaagaaaatgaataatttcaagcCCGGGAAAGACGTGGAGGTGACGCCACCTCCGTCGACAGTCTTCAAAGTAAAAGTTTCCCCTTCGACTGCAGAGGAAGCGGTCACCCTGGAGAGACCGTCTCCCGCCAGACCGCCTATCGGTTCCATTACCTGCACCTATCCCAATCCGAGAGAACATTTGGAGGGCAGAGCAGAGGGAAGGAACAGAGAAAACGGAGCACTGAAGGCGGAAGTTGGAGCGGAGTCGGGCAAAGAACAACCTCTCGATTTGAGAGTCAGTCGCAAGAAAGTCGTTGTGAGCAAGAGCGAAGAGTGTCCGGAGGATAATAAAACTCCGCCTTCCAAGGAACCATCCCCGTCGAGGCGGGAAGGCAGCCCGCCGAAGAACCCCAGCCCGGTTAAGGTGGAGGGAGACGATGCAAAAGAATCTTCGCCGGAACCAAAGAAGAAGTCAGCCATGCAGACGTTGCCCATGATCTCCAGCAACGCAGCCACAAGCACCAGCCTGACGCCGCCCACGATGGCCTACCCCAAGCCGATTCATCCGATACTGCTGGAGGCCATATACAGACCTTCCGGGTTTCCTCCAGCGTACCCGCACAAGAACGACCGCCTGCTGGGACCACCGCCGCCTCCACCGTTCGTCCCACCGCGAGCCTTCACTTACCTCGGATCGCTCATGAACGGACTTCCAAACGGTCAACGTCCCTCCTTCgacctttttcgaaattcgctCCCGGCATTCAGCAGTGTCAAATCTTACCAGGACGTTTTAAACACCCATGCGAGTAATCCGGGATTCATCAGTGTCAAATCTTATCAGGACGTGTTAAGTACCCACATGGGTAACGGCACTCCTCCTGTGACGGGGGGCAAGATGAAGGACAGGTACGGTTGTAAATATTGTGGTAAGATATTTCCCCGATCGGCCAATCTAACACGTCATGTCCGAACGCACACAGGCGAACAGCCCTACAAGTGTCAGTATTGCGAAAGATCATTTAGCATTTCATCGAACTTGCAAAGGCACGTTAGGAACATACACAATAAGGAGAAGCCTTTCAAATGTCCCCTGTGCGAAAAATGCTTTGGCCAGCAGACGAACCTCGATCGGCATTTGAAAAAGCACGAGGCCGACGACGGCAGCGGCATCACTCCCGTTGCCGACAGCCCGGAAAGCAACGAGAACGAGAGGGAAGATGCTTGCTTCGACGAGATCAGACTCTTCATGGGAAAAGTCACCTACTCCGGAGACTCAGCTCCTCATCTGTACTCCAACTACATGTACAATCCCCAGAGGTTGGGACAAGGCGTAGAAGTCGTGAAGGGCGACGCCGATTCTGAAACTCTCTCGGAGGACCACTCTCCGACTTCCAACTACCAGGACGACAAGGAATACCCGCTGCCTCTCACCTACGACATCAAACTCAAGACGGAACAGGAGTCGATCAACAACAACGCTCCCGACCAGGAGCCCATCGAGGTCACGACCTAG
Protein Sequence: MPTVLFSAEHSGTSEDDREDIEDEENETLCAVCNKVYRDIEQLDDHLVRTHRYPYEHYKCDRCPRAFSWRPGLLRHQTITHGKVRKFTCENCHKIFTDPSNLQRHIRTHHIGARSHACAECGKTFATSSGLKQHTHIHSSFKPFQCEVCLKAYTQFSNLCRHKRMHADCRLQIKCGKCGQSFSTFTSLSKHKRFCDSTSSPAAGAAALPISQSSPTMNLQGNSPGNPVFIYPGHSSALPLYHSSLLDRYPSLFPPGSPATPYMNNSILFQTSARLKAEDTPKIMGNTSPDYQQRMQRKRLYSNEKERSISPVDKKGKKMNNFKPGKDVEVTPPPSTVFKVKVSPSTAEEAVTLERPSPARPPIGSITCTYPNPREHLEGRAEGRNRENGALKAEVGAESGKEQPLDLRVSRKKVVVSKSEECPEDNKTPPSKEPSPSRREGSPPKNPSPVKVEGDDAKESSPEPKKKSAMQTLPMISSNAATSTSLTPPTMAYPKPIHPILLEAIYRPSGFPPAYPHKNDRLLGPPPPPPFVPPRAFTYLGSLMNGLPNGQRPSFDLFRNSLPAFSSVKSYQDVLNTHASNPGFISVKSYQDVLSTHMGNGTPPVTGGKMKDRYGCKYCGKIFPRSANLTRHVRTHTGEQPYKCQYCERSFSISSNLQRHVRNIHNKEKPFKCPLCEKCFGQQTNLDRHLKKHEADDGSGITPVADSPESNENEREDACFDEIRLFMGKVTYSGDSAPHLYSNYMYNPQRLGQGVEVVKGDADSETLSEDHSPTSNYQDDKEYPLPLTYDIKLKTEQESINNNAPDQEPIEVTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01308180;
90% Identity: iTF_01308180;
80% Identity: -