Rmar022009.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- -
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010007658.1:103606-107167[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00021 0.036 15.5 0.7 1 23 179 202 179 203 0.95 2 17 0.13 22 6.7 0.6 2 23 224 246 223 246 0.92 3 17 0.0097 1.6 10.3 0.2 3 17 263 277 261 283 0.83 4 17 4.8e-05 0.0081 17.5 1.7 1 23 299 322 299 322 0.96 5 17 0.65 1.1e+02 4.5 0.4 2 23 340 362 339 362 0.88 6 17 5.8 9.9e+02 1.5 1.3 5 23 383 401 382 402 0.91 7 17 0.0012 0.21 13.1 0.6 2 23 413 435 412 435 0.92 8 17 4.8e-05 0.0081 17.5 0.3 2 23 445 467 445 467 0.95 9 17 0.087 15 7.2 0.1 1 21 530 550 530 551 0.94 10 17 7e-05 0.012 17.0 3.1 1 23 556 579 556 579 0.93 11 17 6.4e-06 0.0011 20.2 2.0 2 23 586 608 585 608 0.97 12 17 0.029 5 8.7 0.1 1 23 615 638 615 638 0.94 13 17 8.9e-05 0.015 16.7 0.3 1 23 644 666 644 666 0.98 14 17 0.00022 0.037 15.4 0.4 2 23 674 695 673 695 0.97 15 17 1.9e-05 0.0033 18.7 0.7 1 23 701 725 701 725 0.94 16 17 0.00062 0.11 14.0 2.6 1 23 731 753 731 753 0.95 17 17 0.025 4.2 9.0 5.7 1 23 759 782 759 782 0.98
Sequence Information
- Coding Sequence
- ATGGCTGCCACAGAAACACAAGAAATCGTGGTGGATTTCGGAAAGATTTGTCGGTTATGTCTAACAGAAGATGGGGttcttttaagtttattttcaacGGATTCTTTACTCGAAAATACTTTGAAATCAGTACCAGAGAGGATTTCAGATTTAATGGCCATCAAAattacTGAAAATGATGGGTTTCCTTCGTGGATATGCCATAACTGCCTTTCCCAAGTCGACAGAtgttatgatttttttgatatgtGTAGAACATCTCAAATCACACTAAATGACAGCTACATTAAAGCTCTGTCTGATGCTGGAATTGAGTTTCCATCTACAAAGgtTTATTTTAATCAGGTGGAGAATGACGAATCTGACCTTGTGGGCGTTcagcaaaatataaacattgagattattaataatgaggTCGACTATCCTGTTGAAGCTGAATGTGCTGTTGAAGTCAGTGACTCGAAAGAAATACCTGAGAATAATTTGCCTAAAATCGACGAAGAAGggaacaaaaatgaaaatgaatccaACCAATATTTTTGTAGCGATTGTgccaaagaatttattaacaagGACGAACTTTCGGTTCACAGAATAAGCGTCCATCACGATGATTTGATCACCGAAACAACagtcgaaaaagaaaaagtcaaataCACAGGATTGTGGACTTGCGAGTTTTGTGGTGATACATTCCGCAGTCGAGGAGCGATCTTAACGCATTTCCGATTTAGGCACATgatggaagaaaagaaagttgCCGGCTATTACAACAAATTCATTGCTTGTAAATATTGTGGTTCTTCTTTCTCGAGGAAATTCATGTTAAGACATTTAGAAATTGTTCACAGACTGAGGAAGAATTTGGAAATGGAACCAACGGATATGGATTCCTTTGATTGCAAGATCTGCTACAGGCCTTTCATGAGGCAGTCCTCCTTGAGAAACCATCTCGAAAAGTTTCACGGCGACAGCTTGGAGATGATCGCAGAAGCCGAAAACTGCGACGTCGTCTGGAACTGCAGCGAATGTGATTCACTCTTTtccgaaaaggtttttcttatGCAGCACTATGGTAACAAACATTCCAAATACCCACTGGAGATGGATTCTTTGAAAGTActcaaaagcagaaatttaatttgtacttGCGGAACGATAACGTCAAGTTCATTCGACTTCTTCATTCACGAAATTTATCATCATAAAGAGGAAAGCGAGAAGACTATACCTTTGGAATGCCCCGCAtgccatgaaatttttatttatctggatcatttaaaaaagcatctCATAGCTTATCACTGGTTTGTAACTAGTAGTTACGAAAACGAATGCACCCTTTGCGGGAAAGAATTTGGTTCAAATCAGTCGCTGAGGATTCATCTACGCGAGCTCCACGACGTTCGATTCAGTAGTCTTCCCAGTGAAGAGAGGTTTATTAACGAGGATATGAAAAAAGGCAAGACcgataataaaagcaaatctCCCACCAATGGAGAAGCAGATGCGAGCGTAGTCAGTGACTGTGTAGTCGAATTAAAGGACAAAGTCAAAAATGGAACCTACCCTGGGAAGGAGTCTCTTTTCGTGTGTGAATCCTGTGGGGATTACTACGAGACCGAAGAAGAGCTTAAAAAGCATAGAAACATGTGCCAGGAAACTCACACGTGCGAAATCTGCAACAAGGTGTACAAATCTGACAATCATTTGAAAAGGCATATCATTGACTATCATAACACAGTGGCGCCTGTTAAGTGCCCGCTTTGTCCAAAAGTTTTCCCTCGCAAGATGAACTTGCATAATCATTACAAAAGAAGGCATTTAAAACAGACTAAGAGTTTCGTATGTTCGTTCTGCGGTCTCGCCTTGAAGGGAAAAGTCGCCTTGAAAAGTCACGAGGACAGAGTACATCGGAACATAAGGAGCTTCAAGTGCTCCGAATGTCCCGAGGCATTCACTACTGAAAGCATTTTGCAGAAGCATGCACAAAGGCATATGGCAGAACGGCCGATGCTTCAGTGTCAGTACTGCGAAAGGAAGTTTAGCACAATCAGTGGTATAGAAAGACACGTGAAAATTCATGaggggaaaaaagattttgtctGCGAAATCCCGTCATGCCAGAAGCCTTTTTACACGAAAAGCGAGTTAAAACGGCACATTAAATTCCACAATAAAGACTTTAGGCACGTGTGTCCCGTGTGTAATCACAAATTCATGTCTCCAGGCGAGTTGCGGAAACACTCGACAAAACACACGGGAGAGCGTCCGTTTAAATGCCATTTATGCTCTTGCACATATGCGAGACGAGATgataaagtaaaacatttgaaacgggttcataatttgaaagttaaaagaatttaCGGGAAACCACTGAGGAAACACTCAAATGAAGATGACGAGCCTATAGATAACATTGTCGTGGACGAAGAATGCTCAGCGGAAAATGCCCCCTCACAAGACGTAGTTCCcacaaaggaaaatattgctcaatga
- Protein Sequence
- MAATETQEIVVDFGKICRLCLTEDGVLLSLFSTDSLLENTLKSVPERISDLMAIKITENDGFPSWICHNCLSQVDRCYDFFDMCRTSQITLNDSYIKALSDAGIEFPSTKVYFNQVENDESDLVGVQQNINIEIINNEVDYPVEAECAVEVSDSKEIPENNLPKIDEEGNKNENESNQYFCSDCAKEFINKDELSVHRISVHHDDLITETTVEKEKVKYTGLWTCEFCGDTFRSRGAILTHFRFRHMMEEKKVAGYYNKFIACKYCGSSFSRKFMLRHLEIVHRLRKNLEMEPTDMDSFDCKICYRPFMRQSSLRNHLEKFHGDSLEMIAEAENCDVVWNCSECDSLFSEKVFLMQHYGNKHSKYPLEMDSLKVLKSRNLICTCGTITSSSFDFFIHEIYHHKEESEKTIPLECPACHEIFIYLDHLKKHLIAYHWFVTSSYENECTLCGKEFGSNQSLRIHLRELHDVRFSSLPSEERFINEDMKKGKTDNKSKSPTNGEADASVVSDCVVELKDKVKNGTYPGKESLFVCESCGDYYETEEELKKHRNMCQETHTCEICNKVYKSDNHLKRHIIDYHNTVAPVKCPLCPKVFPRKMNLHNHYKRRHLKQTKSFVCSFCGLALKGKVALKSHEDRVHRNIRSFKCSECPEAFTTESILQKHAQRHMAERPMLQCQYCERKFSTISGIERHVKIHEGKKDFVCEIPSCQKPFYTKSELKRHIKFHNKDFRHVCPVCNHKFMSPGELRKHSTKHTGERPFKCHLCSCTYARRDDKVKHLKRVHNLKVKRIYGKPLRKHSNEDDEPIDNIVVDEECSAENAPSQDVVPTKENIAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308179;
- 90% Identity
- iTF_01308179;
- 80% Identity
- iTF_01308179;