Rmar006154.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- -
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010000009.1:2486741-2489277[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.037 6.3 8.4 2.8 1 23 43 66 43 66 0.92 2 19 7.3e-06 0.0012 20.1 1.6 1 23 97 119 97 119 0.98 3 19 1.9e-05 0.0033 18.7 3.2 1 23 132 154 132 154 0.98 4 19 4.2e-06 0.00071 20.8 2.1 1 23 160 182 160 182 0.98 5 19 2.1e-05 0.0036 18.6 3.5 1 21 188 208 188 209 0.96 6 19 0.00026 0.044 15.2 0.9 1 21 216 236 216 237 0.95 7 19 5.3e-05 0.0091 17.4 2.1 1 23 297 319 297 319 0.96 8 19 1.9e-05 0.0033 18.8 0.3 1 23 325 347 325 347 0.99 9 19 0.0053 0.9 11.1 0.4 1 21 353 373 353 374 0.93 10 19 2.2 3.8e+02 2.8 1.6 1 20 381 400 381 402 0.90 11 19 2.6 4.5e+02 2.6 0.0 6 19 413 426 412 429 0.93 12 19 0.0022 0.37 12.3 2.0 1 23 432 454 432 454 0.99 13 19 9.2e-06 0.0016 19.8 1.0 1 23 460 482 460 482 0.98 14 19 7 1.2e+03 1.3 1.1 2 14 489 501 488 511 0.83 15 19 8.2e-05 0.014 16.8 0.1 3 23 523 544 522 544 0.95 16 19 0.0036 0.61 11.6 0.5 3 23 563 584 562 584 0.98 17 19 0.0033 0.56 11.7 1.6 2 23 596 617 595 617 0.96 18 19 1.6e-05 0.0028 19.0 2.6 3 23 625 645 624 645 0.98 19 19 0.00035 0.06 14.8 0.9 1 19 651 669 651 672 0.95
Sequence Information
- Coding Sequence
- ATGTTATTCCTCCATAACAAGGCGATGCATTGCCCGAATGAGGAAGTGAggaggaaaacggaaaacggaaataatccccaagaagaggaagaaaaggatAAAGATTCGAATTCGGACCTAGCAAATTACAAGTGCGAGATTTGCTCCAAAGAATTTGTCAGCTTCGAAGGATTCGATTACCACAAGAATCATCAGCACATGGGAAAAgagtcaaaaaagaaaaggaagcggaaaattAGTTGTTCGAACGACGGAGACACGGACAATACTGAATCCTTTCCAGCCAATTTTATGTGCAAAATTTGCTCAGCTTCATTTACGATGAAATCGTCGTTGCAAACTCATTTAAAATCGCACAATGTGACAAAAAATGTTGAAGTTAAATCGGGATCTCATCAATGCTGTATTTGTCCGCGATCATTCACCAGCAGCGATGGGCTAAAGTATCATTTAGCAACCCATACGGGAGAACGAAGGTTTTCCTGTGATCAGTGTGGGaaaagattcataaaaaagACTCATCTTTCCGAGCACATAGCCACTCACTCAGaagtaaagtattttaaatgccCAAGATGCCCCAGGACGTTCAGCACCCATTCCGCTTACAAGAAGCATATAAAACACTTTCCCGGTTTGCATTCTTTCCCTTGCAACAAATGCGGAAAATTGTTCACGAAAGAATCGATGATTGAGAAGCATATGTGCGTggatttagtaaaaattacaatggCACCAGAAGTAAGGGCTTTATTAAGCGAGGACATGATTGAAGAATATTTGTGCTTGGCCGAAGAACATATGGTGCAGGATTTGTCCatgaataatgaaagtaaCGACAACGGCGAAGTCCATAAGAAGCAGGAACGCAAAGATGACAGCGCAACACATTCCTGTTACAAATGCTTTAAGGTTTTTCCCAATTTGTCATCGCTGCAGGCGCACCAAAATGATCATATAGGAAAACAGAAATATCAATGTCGGTTTTGTCCGGAAAGCTTTAAGAGAGCGGACGCGTTTGGAGCTCATATACGCAATCATTTGGGAAGCACTCCTTATATGTGCCTGAAATGCAATCGTAAATTTATATCTCCTTTTACATTGTCGATGCATGCGAAGAATTATCCGGGAGACCATTCGTTTACCTGCCAGAAATGTCAGAGATGGTTTCCCAGCGAGAAACGGCTTGACAAGCACGAATGCATCCTGCAGAATGCGGATTTTTTCAAGTGCGCTTGCGGATCCACGTTTGGCAATTGGAACGAACTTTTGCAGCACGCAGGGACCAAACCGTACAAGTGCTGCTCCTGCGAGCTCAAATATCCCACTCTCACAGCTCTCGCTCGTCATATCAAAAAACACACGGGAATCAAGCCATTTTCCTGTGAGATTTGCGGCAAGTCGTTTAgagcgaaaaataattatttaaaccataaaaacattcataagaACCTGAAGGAAATCCAATGCGAACATTGCGAGTATAAGAGCAAATCTCAGAAAAGAATGGACTTTCATCTCTTCAGaAAACATGACATAGGTTCGAATCTGGGAAAGAGCACACTTTGTCCAATTTGTGGATTAATGTTCCCGTACAGCTCTCAAATGAGGAAACATTTGGAGCTAGAGCACGGAAATGAATTAACGTTCGATGAAGCTTCAAGGAAATCTCTGCCAGCGGAACTGTGCACCCTTTGTGGCAAAatgttgaataataaatacattcttGCTAACCACATGAAGAAGGTTCACGACCCAAACGCTtcgaagaaagaaaggaagatAAAGTGCGAGttttgcgaAGAAAAGTTTCGAACTGTGAAGAAGCTTCAGCATCACGCCGAAATACACGAAGCCCCGGGATTAAGGGCCTGCGAAATATGCCacaaggaattttattttgccaaaGAATTGAGAAAGCACATGAAGAAACACGACACCAACAAACCTTATTCTTGCCCGCGTTGCGGGAAGCACTTCAAGGTTTCCGTCAGTTTGAAATACCATTCCACGATTTGCGGAAATGTCATTCAGCGGATGCCGAGCAACCgcaggaaaaaagaattaaaggaACCATCGATGAACGTTCTCTACGGACACATCGATCCCATTGATCTCAATAACCAATCCTGTATGCTTCAGATTTAcggaagataa
- Protein Sequence
- MLFLHNKAMHCPNEEVRRKTENGNNPQEEEEKDKDSNSDLANYKCEICSKEFVSFEGFDYHKNHQHMGKESKKKRKRKISCSNDGDTDNTESFPANFMCKICSASFTMKSSLQTHLKSHNVTKNVEVKSGSHQCCICPRSFTSSDGLKYHLATHTGERRFSCDQCGKRFIKKTHLSEHIATHSEVKYFKCPRCPRTFSTHSAYKKHIKHFPGLHSFPCNKCGKLFTKESMIEKHMCVDLVKITMAPEVRALLSEDMIEEYLCLAEEHMVQDLSMNNESNDNGEVHKKQERKDDSATHSCYKCFKVFPNLSSLQAHQNDHIGKQKYQCRFCPESFKRADAFGAHIRNHLGSTPYMCLKCNRKFISPFTLSMHAKNYPGDHSFTCQKCQRWFPSEKRLDKHECILQNADFFKCACGSTFGNWNELLQHAGTKPYKCCSCELKYPTLTALARHIKKHTGIKPFSCEICGKSFRAKNNYLNHKNIHKNLKEIQCEHCEYKSKSQKRMDFHLFRKHDIGSNLGKSTLCPICGLMFPYSSQMRKHLELEHGNELTFDEASRKSLPAELCTLCGKMLNNKYILANHMKKVHDPNASKKERKIKCEFCEEKFRTVKKLQHHAEIHEAPGLRACEICHKEFYFAKELRKHMKKHDTNKPYSCPRCGKHFKVSVSLKYHSTICGNVIQRMPSNRRKKELKEPSMNVLYGHIDPIDLNNQSCMLQIYGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -