Basic Information

Insect: Ricinus marginatus
Gene Symbol: su(Hw)
Assembly: GCA_028565995.1
Location: JAOWBB010000012.1:1779211-1783115[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.2e-06 0.00021 22.5 1.7 1 23 40 63 40 63 0.97

2 12 1.8e-06 0.0003 22.0 1.1 1 23 69 91 69 91 0.98

3 12 7.5e-05 0.013 16.9 0.5 2 21 98 117 97 118 0.93

4 12 6.4e-08 1.1e-05 26.5 1.4 1 23 129 151 129 151 0.97

5 12 6.1 1e+03 1.5 2.4 1 23 161 183 161 183 0.82

6 12 2.7e-06 0.00046 21.4 2.2 1 23 189 211 189 211 0.98

7 12 5.1e-05 0.0087 17.4 1.2 1 23 217 239 217 239 0.98

8 12 8.4e-07 0.00014 23.0 1.7 1 23 245 267 245 267 0.95

9 12 7.3e-05 0.013 16.9 1.5 1 23 273 296 273 296 0.96

10 12 7.8e-07 0.00013 23.1 1.5 2 23 303 324 302 324 0.98

11 12 2.5e-07 4.2e-05 24.7 0.3 1 23 330 352 330 352 0.98

12 12 4.4e-06 0.00075 20.8 2.0 3 23 360 381 359 381 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.2e-06	0.00021	22.5	1.7	1	23	40	63	40	63	0.97
2	12	1.8e-06	0.0003	22.0	1.1	1	23	69	91	69	91	0.98
3	12	7.5e-05	0.013	16.9	0.5	2	21	98	117	97	118	0.93
4	12	6.4e-08	1.1e-05	26.5	1.4	1	23	129	151	129	151	0.97
5	12	6.1	1e+03	1.5	2.4	1	23	161	183	161	183	0.82
6	12	2.7e-06	0.00046	21.4	2.2	1	23	189	211	189	211	0.98
7	12	5.1e-05	0.0087	17.4	1.2	1	23	217	239	217	239	0.98
8	12	8.4e-07	0.00014	23.0	1.7	1	23	245	267	245	267	0.95
9	12	7.3e-05	0.013	16.9	1.5	1	23	273	296	273	296	0.96
10	12	7.8e-07	0.00013	23.1	1.5	2	23	303	324	302	324	0.98
11	12	2.5e-07	4.2e-05	24.7	0.3	1	23	330	352	330	352	0.98
12	12	4.4e-06	0.00075	20.8	2.0	3	23	360	381	359	381	0.96

Sequence Information

Coding Sequence: ATGGACAAATGGTGTTCCaagcaagaaaatattaaagtgtGGGAATCTGATCCACTACCTGATGGTAAATGTCAGTGCTGCGGAGAGGATGTCAGTTCTAATCATGAAAAAGGCGAATTTGAATGTAAGGATTGCAACaagaaattcgaaatgaaTACTAGTTTGCAAAGGCATAGAAGAATAATACATGAAGCAGTAGACGCTTTTAACTGTCCCGAATGTTCTTCTACATTCTCAGATAAAGTGACGTTAACAAAACATATGTCGACACATActggaaCAAAACCATGGTCTTGTGAAAGATGCCAGATCATGTTTACCCGCAAATATCATTTAGTTCGCCACATTTTGCAGACAGGATGCGATGGTTTACCACGTCCAACTCATAGCTGTCAGGTATGCGGCAGAGTCTTTAGCAGGAAAGATAACTTAAGGGAACACCTTCGGGCTCACGCCGGGGTGAATAAAAGGCGAACTGCATATCACTGCGATTTGTGCGACAAAGAAATACTAGGTGCTCATTTATTCAGTCGTCATAAGAAAGAACATCTTGGGAATAAGCCTTATCCTTGTTCTTTTTGTGGAAAAACATTTAGGACAAGTGGTGCCCAAAAAAAACACACCAGAAAACATACTGGTGAAAAGCCTTATGAATGTAATGAGTGCTATACCAAATTTGCTGCGAAGGAGACATTAAACCGTCACCGCAGACTACACACAGGTGTACGACCTTTTACATGCAAGCATTGCGGTAAAGGATTCATTCAGGCATCACAACTTCGAGCTCATGTTTTTTATCATACAGgtgaATTTGGATTTCAGTGTGATCAATGTGATAAAGCATTTAATCGCAAAGCAAGATTAGACACTCATAAAAAGTATATTCATGAAGGAGCTGAACCCATGAAATGTGATCATTGTGATCGGCAATTCATTAGAAAAGAAGATCTCGCTAGACACATTTTAACCCATACAGGAGTTAGagCTTTTCGATGTGACATTTGCAACAAGGCTTTTGCCGTAAAATCGTCTCTGAAAATTCATCTTCTCACTCATACAAAAGAACCTCCTCGCGCCTGCAATTACTGCAACAGGGCTTTCATACGTCAGGATTGTCTTCTACGCCACATGCGAGCCAAACATCGGGATAAACTTGAAGAATTTATAATCGAAGCTGAAAGGAAGAAATTGCAATTGCAATTGCTAGCCATTACAAATGATGTGAGGAAGAATGACAATATATTGTCAACAATGTCGGAAAATTCGAGTCCGAAAACCGTTCTTTCGGAATCGATATCCGAATTGCTCAAGCTTCTAGTAGATGAAGACACATTAAAGAGCCTTGGGGCTCCCGAGGCTCCAGTCGATCAAATTCTTGATATGATTATTAGAAGATGCGGTCATCAACCGTCCGAAAATCCAGATTTATCAGATATTGACAGATTAagagaaaatgcaaaactcTTATTTACAGTAGTAATAGATGATGCAGCagttaaaacattattaaataatcaatctGTCGATGAGGTAATTAtacatgtattaaatttagcgaaatcataa
Protein Sequence: MDKWCSKQENIKVWESDPLPDGKCQCCGEDVSSNHEKGEFECKDCNKKFEMNTSLQRHRRIIHEAVDAFNCPECSSTFSDKVTLTKHMSTHTGTKPWSCERCQIMFTRKYHLVRHILQTGCDGLPRPTHSCQVCGRVFSRKDNLREHLRAHAGVNKRRTAYHCDLCDKEILGAHLFSRHKKEHLGNKPYPCSFCGKTFRTSGAQKKHTRKHTGEKPYECNECYTKFAAKETLNRHRRLHTGVRPFTCKHCGKGFIQASQLRAHVFYHTGEFGFQCDQCDKAFNRKARLDTHKKYIHEGAEPMKCDHCDRQFIRKEDLARHILTHTGVRAFRCDICNKAFAVKSSLKIHLLTHTKEPPRACNYCNRAFIRQDCLLRHMRAKHRDKLEEFIIEAERKKLQLQLLAITNDVRKNDNILSTMSENSSPKTVLSESISELLKLLVDEDTLKSLGAPEAPVDQILDMIIRRCGHQPSENPDLSDIDRLRENAKLLFTVVIDDAAVKTLLNNQSVDEVIIHVLNLAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01308168;
90% Identity: iTF_01308168;
80% Identity: iTF_01308168;