Rmar024050.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- -
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010008502.1:38297-43234[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.2e-08 3.7e-06 28.0 0.5 1 23 14 36 14 36 0.99 2 20 0.16 27 6.4 0.1 1 10 47 56 47 71 0.89 3 20 0.0016 0.26 12.8 6.4 1 23 78 100 78 100 0.98 4 20 0.00055 0.094 14.2 0.2 1 23 113 136 113 136 0.93 5 20 1.5e-05 0.0025 19.1 0.1 1 23 140 162 140 162 0.98 6 20 0.28 47 5.7 2.3 1 13 171 183 171 195 0.74 7 20 0.00011 0.018 16.4 5.7 1 23 202 224 202 224 0.99 8 20 0.00014 0.024 16.0 2.9 1 23 230 252 230 252 0.98 9 20 0.9 1.5e+02 4.0 1.8 2 23 323 343 322 343 0.96 10 20 0.0093 1.6 10.3 1.1 3 23 352 372 350 372 0.91 11 20 0.0021 0.35 12.4 2.6 1 23 375 398 375 398 0.96 12 20 0.0077 1.3 10.6 2.7 1 23 405 427 405 427 0.96 13 20 0.024 4.1 9.0 1.1 2 23 434 455 433 455 0.98 14 20 0.0001 0.017 16.5 0.3 1 23 461 484 461 484 0.97 15 20 2.5e-06 0.00042 21.5 1.0 1 23 491 513 491 513 0.97 16 20 1.1e-05 0.0018 19.6 2.2 1 23 523 545 523 545 0.95 17 20 0.9 1.5e+02 4.1 1.5 6 23 556 573 551 573 0.92 18 20 2.1e-06 0.00036 21.8 1.8 2 23 580 601 579 601 0.96 19 20 2.2e-07 3.8e-05 24.9 1.4 1 23 607 629 607 629 0.98 20 20 4.8e-05 0.0082 17.5 0.9 1 23 635 657 635 657 0.98
Sequence Information
- Coding Sequence
- ATGCAAGAGCATGGCTATATTCATAAGGGTGAAAAACCATATCAGTGCGAAATTTGTGGAAAATCCTTCACTCAAAGGGGAAATATGAATGCGCATAAGAGAATTCACGATCCGCACTACGATCCGTACGCTTTAAAATATCAGTGCGACGAATGCGGAAAAGGCTACGGCATAGGCCAAAGAGCTTCATTCGATGAACATATAGCAAAACATaaggggaaaattaaaaaacatacgTGCCACATTTGCGGGAAAATGATTACATCTTTGGAATGTTATAAAACTCATGTGAGGACTCACCTAGgcCATATTGATCGCCATAATAAGGCAGCATCATTCATATGCGACGCATGTGGCAAAGGTTTTTATTCCAAAGGTACATTAGAAGAACACAAGCAAGGGAAACACGGATCTGGATTTCCTTGCGAAATTTGCGGAGCTGCCCTGACAAGTGTTTCTAATCTAAGGCAACATAGAAAAACTCACGAGCCGAAACCCGCAGACATGAAATATCAGTGCGATGTCTGCGGACAAGGATTTAGAGCAAGATCTAAATGTGCATTTAGACTTCATGTGTTGAGACATCAGGGTATAGTGAAACAGTTCAAATGTTTTCATTGCGACAAGATACTTACTTCCAACAACAGCTATAGGCAGCACATGAGAAAGCATTCCGGAGAGAAACCGTTCATTTGCGAGTTTTGCAGCAAAGCATTTTCGGAGAAGAAATATCTGCATGTGCATCGTCGCATACACACTGGTGAAAAACCTTACGAgGAATATTTCCGGTCATCTCAAGACCAGATTGCGAATTCCATTATTTCAGAGAGCAGAAAAGAATTGGAAATCGAACCGGATTCGAAGGAGAAGTTGATAGAGTCAAAGTTAATTGAGAGgaataagaaaagaagaagCAAAAACACTAGACTAGGTCAATTATCGGAGCTTTTTAACAATCCAATAATGAAATGCGAGATTTGTGCTGCCATTTATCATGAATCCGAAATGGTCCATCACCGAAAAACGCATCCTGAAATAAGAGAGGCTCTGGAATGTGCACCTTGCAACAAATCTTTCTCCAGCAAAACTCAATTTGACAGCCACAATAAtcgacataaaatttttttctgcgaaGCTTGCAACAAAGATTTCAATCCGAgggaaaaatatacaaaacacATGAAAAGAAAGCATGGAAATTTGCCCAAAACTCACGTTTGCGAGATTTGCAACAAAACTTTTCTAGAGAAATTCGAATTAAACATGCacaagaaaaatcatttgggTGTTAAGGACAAGAAATGCCCTCTTTGCTCTTACGCCACAAATAGCACCACTTATatgaatttacatattaaaaagcatAACAACGAATACGTGTTTCAGTGTAAGATTTGTGGGAAAGGTTTTCTCGCAAATAATCAGTTACAAGCGCATATTAACTCCAGGCACGGAGATGGCGGACAGTTGTTTCCTTGCGACGTTTGCAATAAAACCTATTCCAGCAAGGGTAATCTAAACGAACATAAAAAGCAGCATGAACCCGGATATAAACCCGAAAAAAGTCATATTTGCGAGGAATGTGGGAAAGCATTTCCCAGGAAGCACAAATTACTGAAACACGTATTGCAGCATCGCGGTGTATTCAGCTTTAAGTGCATTCCCTGCAGGAAAGGCTTTTCTTGCAAGGTGTCATTGGATAACCACATGAAAATACATACAGGTGAAAAAAGTTGCGTTTGCGACGTTTGTGGGAAGTCATTCACGGTTAAGAGATACTTGGAGGTTCATAGAAGATCTCATACGGGAGAGAAACCTTATAAATGTGATCAGTGCGACAAAGCTTTTACGCAGCAATCTTCGTTGGTTGTTCATAAGCGTTATCATACCGGTGACAGACCTTATTCTTGTAATATATGTAGCAAAGGCTTCGTGACCGGGACTTTGCTTAAATCgcatcaaaaaaatcattattgctaa
- Protein Sequence
- MQEHGYIHKGEKPYQCEICGKSFTQRGNMNAHKRIHDPHYDPYALKYQCDECGKGYGIGQRASFDEHIAKHKGKIKKHTCHICGKMITSLECYKTHVRTHLGHIDRHNKAASFICDACGKGFYSKGTLEEHKQGKHGSGFPCEICGAALTSVSNLRQHRKTHEPKPADMKYQCDVCGQGFRARSKCAFRLHVLRHQGIVKQFKCFHCDKILTSNNSYRQHMRKHSGEKPFICEFCSKAFSEKKYLHVHRRIHTGEKPYEEYFRSSQDQIANSIISESRKELEIEPDSKEKLIESKLIERNKKRRSKNTRLGQLSELFNNPIMKCEICAAIYHESEMVHHRKTHPEIREALECAPCNKSFSSKTQFDSHNNRHKIFFCEACNKDFNPREKYTKHMKRKHGNLPKTHVCEICNKTFLEKFELNMHKKNHLGVKDKKCPLCSYATNSTTYMNLHIKKHNNEYVFQCKICGKGFLANNQLQAHINSRHGDGGQLFPCDVCNKTYSSKGNLNEHKKQHEPGYKPEKSHICEECGKAFPRKHKLLKHVLQHRGVFSFKCIPCRKGFSCKVSLDNHMKIHTGEKSCVCDVCGKSFTVKRYLEVHRRSHTGEKPYKCDQCDKAFTQQSSLVVHKRYHTGDRPYSCNICSKGFVTGTLLKSHQKNHYC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -