Rmar024046.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- ZFX
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010008502.1:3767-9515[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00016 0.027 15.8 1.8 1 23 20 42 20 42 0.98 2 24 8e-05 0.014 16.8 2.3 1 23 48 70 48 71 0.94 3 24 2.2e-05 0.0038 18.6 1.0 1 23 81 103 81 103 0.98 4 24 0.035 5.9 8.5 0.0 1 23 110 132 110 132 0.94 5 24 0.0002 0.033 15.6 0.3 2 23 139 160 138 160 0.96 6 24 1.5 2.6e+02 3.4 0.3 1 9 166 174 166 175 0.91 7 24 0.027 4.6 8.9 3.3 2 19 223 240 223 245 0.89 8 24 0.018 3 9.4 1.0 1 23 251 273 251 273 0.98 9 24 0.01 1.8 10.2 3.8 1 23 279 302 279 302 0.98 10 24 0.00011 0.018 16.4 0.1 3 23 310 330 308 330 0.95 11 24 0.00031 0.052 15.0 1.4 1 23 336 359 336 359 0.95 12 24 0.00017 0.03 15.7 1.1 1 23 369 391 369 391 0.96 13 24 9.3e-06 0.0016 19.7 0.6 1 23 397 419 397 419 0.96 14 24 6.4e-05 0.011 17.1 0.1 2 23 426 447 425 447 0.97 15 24 1.4e-07 2.4e-05 25.5 2.3 1 23 453 475 453 475 0.98 16 24 0.00052 0.088 14.3 0.2 1 23 482 504 482 504 0.98 17 24 0.013 2.2 9.9 2.1 3 23 565 586 563 586 0.96 18 24 1.6e-05 0.0027 19.0 0.9 1 23 590 612 590 612 0.98 19 24 0.0043 0.74 11.3 0.2 1 23 618 640 618 640 0.97 20 24 8.2e-05 0.014 16.8 0.6 3 23 648 668 646 668 0.96 21 24 0.013 2.3 9.8 2.2 1 23 674 697 674 697 0.92 22 24 2.6e-05 0.0045 18.3 1.5 1 23 707 729 707 729 0.99 23 24 1.9e-06 0.00033 21.9 1.9 1 23 735 757 735 757 0.98 24 24 3.6e-05 0.0061 17.9 1.1 1 23 763 785 763 785 0.98
Sequence Information
- Coding Sequence
- ATGCAGAAAGCTCAGCTGAAAAGCCACGAAAAGCGAAAGCACTACAGAGAGTTTTCTTTCAAATGCGAATTGTGCGGCAAGGGCTACCATACCAAGTTGGAGTTGCAGGTACATACGAATTCCCATACTGGAGAACGACCGCACATGTGTGACGTATGTGGGAAATCTTATCCGTCTAAATCCAACATGATGGGTCACAAAAGAGCTCATCACCCCGGGAAGGATGGTACGGTGAAGCGATTCCCGTGTGAATCCTGTGATCGAGTATTCGTCATGAAGAGATCTCTACAGCAGCATCAGAGGTATCACACTGGCGAGACGGGGAAATTTTTGTGCGATGTGTGCGGTAAAGGATTGGCAAGTagagaaattttgaaagctcACAGGCTGATTCACACGGGAGAAAAGCCTATAGTTTGCACGGTCTGCATGAAAGCGTTCAGCAGGACAAAATACCTCCGAGTTCACATGTTAATTCACACCGGGGAAAAACCTCACAAATGTGAAGAGTGTGGAAGgtcTGCATTATTTTGCGCGGGTGACAAATTATATACGAATATTTTAGTTGAGGAGAAGCGAGCAACTGATGGAAAGACAATTGTTCAGAAAAAAGATCCCCAGAATGTTAGAAAGGCCAGCTATGTGCAGAAGGTCCGAGCAGTTGAAGTTTGCAAAGTatgcaagaaatttttcaattctagGGTGAATTATGAAACTCATTGCAAAGGAGAGCACGGCATAGATCGCCCGTACACGTGCAACGTATGCAATGGGAATTTCAAGAGTCCACACATATTGTCCGGCCATATGAAATTGCATTCGCAGCAGCGCGATTACAGTTGCgatttatgtgatttttcgTGTTTCTCGAAGAACAACTTAGACATCCACAAAAGAAGAAATCACTCGAAGGAGTTCCTTGTGAATTGCGAAATTTGCGGTAAAGGTTTCTTCAGTAAGGTTGAACTTAATGTGCATAAAAATGCCCATAGTGGCAACCGCCCATTTCAATGCGAATTGTGCGGTAAAGATTACATGTCGAAATCACATTTAGGATCACATAAAAAGTGGGTGCATCCCGAACTCTTCAGCAGTGATAAATACCATAAATGTCTCATTTGCTCCAAGACATTTCCCTTTGCAAAACTTTTGATGAGACATTTGGAAGCACACGCGGGCACGAGGAAATACCTCTGTGACTTTTGTGGCAAAGCTTTGTCCAGTCAGGAATCGTTGAAAATACACAGAAGAACTCACACGGGTGAAAAGCCTGTTGTGTGCGACATTTGCGGTAAAGCTTTCGGCGGAAGATATTACATGAGAGTGCACAGGCGCATGCATACAGGGGAAAAGCCCTATTCATGCAGTCAATGTGGAAAATCTTTTACTCAGCGATCTACACTATCTCTGCATCAGAGATCTCATTCAGAGACGAAGAAGACCTATTCATGCTCTGTATGTACCTTGATATTTTCTTCCAAAGCTGTTTTAGCAAATCATGCAAAAACCCATGAAGCTCAgagtaATAGCTCATTCTGCACTGTTGCCTCTCAGGACGTGCCGATTGCTGATGCTTCAAAtgcgaaaccgaaaaaaaagaaaaaatctaagAAACTGACGAAGAAAGctttgaaaatgatgaaaggTAAATACATTCCAGGAACGCgcaggaataaaaaaaggccGGATATTTGCGACGTATGCAAACTGACAATGACTCACAAGGATGAGCTGATCCACCACCTGAAGAAAATTCACAAAGTGGAATATCGCTGCAAGCAGTGCgggaaattatataaaagcgCGAAGAATTTGGCAAACCACGAGAAAATCCACACGGCACCGAAGGAGTTCATTTGCGAGATATGCGGCTACGCCTCCTACAACCGAGGAACTGTCGCCACCCACAGAAAGCGACACACCAAGGCGTACACGGACTTTTGTGACGTTTGCAATAAAGGTTTCTACACAAGATACCAACTGGAGGAACACAGAAATTTGCATACGGGAGAAAGACCATTCAAATGCGAATTCTGCGACAAAGGTTTCATCTGCAAGGGAACCCTTGAAAAGCACAAAATAGCCAATCACTCGAAGCTTTTGGAGAACGTTAAGAATTATCCGTGCACCGTTTGCGTGAAAACATTTCTCTTCAAGAAGAATCTTGTCCGTCACATGAGGACGCACACGGGTGAGAAGCCGTTCGTCTGTAACTATTGCGGGAAGGGATTATCCAGTTCGCATTCGTTGAACGTTCACAGAAGAACCCACACCGGTGAGAAGCCGTTCGTGTGTGATTTGTGTGGGAAAGGCTACGGCCATGTTAAGTATCTAAAAGATCATATGCGTTCGCACGGAAATCAAGCACCGGAACGTTCCAGAAGGCCGAGGCAGTCTCACCAAGAGGTACCTTCCCAGTCCGTTCAAGTAAACCAGTTGACGACGGTTTTAACGGCAGTTACGGATAATCAATCCCAAACCGATGCGATGAGCCACATCCCGATCATCGGACCGGCTGTGGTATCCGTGTGTCAGCAAGTTCATCGAAATCAGCATCCAAATATGACGATGGAGATGAGAGCTGATCCCCATAACCAAATCGACTGGCCGAGACGCGCATCTCTCGATTTGGTCGAGGAGAGAACCATTTCCGGCGTTGTGAACGACTGGACAAGAAGGCACCCGAACACGATGGCAGCACCGATATCCGGCATCGGTTTCTGGCAAGGGTCTGGGACTAGATAG
- Protein Sequence
- MQKAQLKSHEKRKHYREFSFKCELCGKGYHTKLELQVHTNSHTGERPHMCDVCGKSYPSKSNMMGHKRAHHPGKDGTVKRFPCESCDRVFVMKRSLQQHQRYHTGETGKFLCDVCGKGLASREILKAHRLIHTGEKPIVCTVCMKAFSRTKYLRVHMLIHTGEKPHKCEECGRSALFCAGDKLYTNILVEEKRATDGKTIVQKKDPQNVRKASYVQKVRAVEVCKVCKKFFNSRVNYETHCKGEHGIDRPYTCNVCNGNFKSPHILSGHMKLHSQQRDYSCDLCDFSCFSKNNLDIHKRRNHSKEFLVNCEICGKGFFSKVELNVHKNAHSGNRPFQCELCGKDYMSKSHLGSHKKWVHPELFSSDKYHKCLICSKTFPFAKLLMRHLEAHAGTRKYLCDFCGKALSSQESLKIHRRTHTGEKPVVCDICGKAFGGRYYMRVHRRMHTGEKPYSCSQCGKSFTQRSTLSLHQRSHSETKKTYSCSVCTLIFSSKAVLANHAKTHEAQSNSSFCTVASQDVPIADASNAKPKKKKKSKKLTKKALKMMKGKYIPGTRRNKKRPDICDVCKLTMTHKDELIHHLKKIHKVEYRCKQCGKLYKSAKNLANHEKIHTAPKEFICEICGYASYNRGTVATHRKRHTKAYTDFCDVCNKGFYTRYQLEEHRNLHTGERPFKCEFCDKGFICKGTLEKHKIANHSKLLENVKNYPCTVCVKTFLFKKNLVRHMRTHTGEKPFVCNYCGKGLSSSHSLNVHRRTHTGEKPFVCDLCGKGYGHVKYLKDHMRSHGNQAPERSRRPRQSHQEVPSQSVQVNQLTTVLTAVTDNQSQTDAMSHIPIIGPAVVSVCQQVHRNQHPNMTMEMRADPHNQIDWPRRASLDLVEERTISGVVNDWTRRHPNTMAAPISGIGFWQGSGTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -