Rmar024048.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- -
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010008502.1:26806-32845[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 3.4e-06 0.00058 21.1 0.4 1 23 16 38 16 38 0.98 2 33 4.6e-06 0.00078 20.7 0.2 1 23 44 66 44 66 0.99 3 33 0.0017 0.28 12.7 0.4 1 21 72 92 72 97 0.93 4 33 0.36 62 5.3 0.1 1 23 108 131 108 131 0.91 5 33 8.5e-06 0.0015 19.9 1.4 3 23 140 160 139 160 0.98 6 33 2.6e-06 0.00044 21.5 1.8 1 23 169 191 169 191 0.98 7 33 0.00025 0.043 15.2 3.4 1 23 197 219 197 219 0.98 8 33 7.5e-07 0.00013 23.2 1.3 1 23 225 247 225 247 0.97 9 33 2.3e-07 3.8e-05 24.8 0.9 1 23 253 276 253 276 0.98 10 33 6.8e-05 0.012 17.0 0.6 2 23 429 451 428 451 0.96 11 33 0.29 50 5.6 0.2 2 21 458 477 457 478 0.92 12 33 0.00061 0.1 14.0 0.4 1 23 486 509 486 509 0.95 13 33 0.00045 0.077 14.4 5.4 1 23 512 535 512 535 0.96 14 33 1.1e-05 0.0019 19.5 0.6 2 23 544 565 543 565 0.96 15 33 0.00031 0.052 15.0 0.7 1 23 570 592 570 592 0.98 16 33 0.00024 0.041 15.3 2.9 2 23 599 621 598 621 0.95 17 33 1.7 3e+02 3.1 4.8 3 20 628 645 626 648 0.92 18 33 3.5e-05 0.006 17.9 1.6 1 23 657 679 657 679 0.97 19 33 4e-06 0.00069 20.9 1.5 1 23 686 708 686 708 0.98 20 33 1.2e-06 0.00021 22.5 0.2 1 23 714 736 714 736 0.99 21 33 0.18 31 6.3 0.8 2 23 844 864 843 864 0.95 22 33 0.044 7.5 8.2 0.2 6 23 875 892 875 892 0.99 23 33 0.31 53 5.5 5.3 1 23 895 918 895 918 0.96 24 33 0.00025 0.042 15.3 4.5 1 23 928 950 928 950 0.98 25 33 0.01 1.7 10.2 3.7 1 23 956 978 956 978 0.97 26 33 0.00019 0.033 15.6 1.2 1 23 984 1007 984 1007 0.97 27 33 2.9e-06 0.0005 21.3 0.8 1 23 1014 1036 1014 1036 0.98 28 33 0.0023 0.39 12.2 5.4 1 23 1046 1068 1046 1068 0.97 29 33 0.42 71 5.1 5.1 2 23 1075 1095 1073 1095 0.93 30 33 0.00034 0.058 14.8 0.2 1 23 1101 1123 1101 1123 0.93 31 33 7.3e-05 0.012 16.9 0.8 1 23 1132 1154 1132 1154 0.97 32 33 1.1e-05 0.0018 19.6 3.4 2 23 1158 1179 1157 1179 0.95 33 33 3.2e-05 0.0054 18.1 1.1 1 23 1185 1208 1185 1208 0.97
Sequence Information
- Coding Sequence
- ATGTTAAGGCAGCATCTTTTGAGGCATTCCGGGACGAAGAAAGTGTATAAATGCTCATACTGCGGTAAAGAACTTTCATCCAATGCATCGTTGAAGGCGCACACGAATATTCACACAGGGCTGAAGCCGTACGTATGCGAAATGTGTGGTAATGGATTTGCTCGCAGAAATTACCTGGTAGTGCATATGCGGACACACACGAGAGAAAAGCCTTATGTTTGCAAAGAGTGCGGCGCCGCATTCGCGCAAAAAACTTCTCTCACATTTCACTTGAGACAGTTGAGATCTCACTTAAATCAAAATACCGGGGCTTCCCTGGACTTTATATGCGCTTTCTGCGACAAGGGTTTTCCTGCGGACGAAGTTTTGCAAGAACATCTCGCAAAATTCCACGGCGAAGGAGCCTCACGCATCCTCTGCGATATCTGCAACAAAACTTTTGCAAATCGAAAAAATCTTAGGGTTCACAAACAGTCTCACGAGCTGACTTACGAAGAGCGGAAGCACCAATGCGATGTCTGcggtaaaaaatttctcacaaaaagcaatttattgcGCCACATAAGAGCTCATGTTCAAACCAGGCAATTTGAATGCAGCTACTGCAAAAAGTGTCTTTCATCGTTGTCGACGCTTAAAGACCACGAAAAAATTCACACAGGAGAAAAGCCatttatatgtgaaatttGTGGAAAATCTTTCAGTCGCAAAAAATATCTTGTCACCCACAGCAATACACATGCAAACGAGAAATCCTACTCATGCAAAGAGTGTGGATCTTCGTTTTCCCAAAGAGGAGCATTGACCAGACATCAGCGTACAATGCACATTAAGCGTGACCCGGTCAGAATCATGGAAAACGTGAGGAAGACAAAGAAATGGGCCTTAAATGTCAGGAAcaaGTTGAAAGACGTGGAAAATGTACTTCTGGAAATACCTTGGTTCGACGAATCGAATTCGGAAAATACCATCAGTGGTTGTCttaaaaaggatgaaaacAATCGcaacaaggaaaaaaacataaaggATTGTAAGAAAGTaattgaagggaaaaaattaggAACGGAATCCGATGCTAAGTTAAGAGACATCGTCGAAAAATGCTCAATGGGCCAAAATTATTGCATAATTTGCAGCACTCAGTATTCATGCAAAATCGATTTTGAAATCCATGTCAGAAGTCACAAAAAAATCCCTTGTATGATTTGCAATAAGATATGTTTGACTGGACTGAGGTTGCTAAGTCATGTGCGTAACATGCATTCAAACAAACCAAAGAATCTTCGATGCGATCAATGCAGTAAAATGTTTGCTACTAGCAACTCGTTATGGGTTCATAAGAAAACAATTCACCGGACCAAATGGGAACTGATGTGCTTTCAGTGCGGATACGGAACCAACAGCAGAGAAATGTTCGAAGAGCATCTTCAAAAGGCCGGAGAAAATCATTCCTCTTTTAAGTGCGATGCTTGTGATAAAGAATATGCTAGTCAGCAAAATCTTGATAAACACGTTCAACTCTATCACATAGACCATCATTGCAAATACTGTAATAAGGAATATGGGAATAGAAATAATCTGCTTAGGCATATCCAACGCTCGCACGGGAAACAGAAGTTTCGAAATATCCCCTGTGATCAGTGCAATAAAATGTTCTTCACAAAGTGGCAGTTAAAAGTTCATATGAATCTTCATATAAACCAAAAACATCAGTGCCCTTATTGCGAGTATAACACAGTGTATCCTCAAGCACTGAAGACgcacattaaaattcatactaAGCAATACAACTGCATATGTGATTGGTGCGGCAAAGGTTTCATGAACAAATGTGCATTGAAAAATCATATGTCTCGTGTTCATCTCGGTGTCATAGTCTGTTGTCCGGTGTGCCAGAAAAAGTTCCACGCTCAAAGATATTTGGACCTGCATATGGAATGCCATCAACCGGGATACGAGATGCGAAATCATCAGTGCGAAATATGCGGTAAGCGATTCCTTCGGAGACCGATGCTGCGACGACATTTGCGAGCGCACAAAGGCCTCACAAAGACCTACAAATGCTCATATTGCGACAAAATGTTAACATCGTCTTCATCCCTAAAAGATCACACAAATATCCACACCGGACAAAGGCCATATGTTTGCGAGATATGCGGGAATGgatttgcaagaaaaaattaccttaCTGCCCATTTGAGAACGCACACTAAGGAAAAACCTTTTAGCTGCGAAGAATGTGGaCCGGAAAGCTCATGGACGGAAAATTACCAGGTGGAAGAAAGTTCGGAGTGGCTCGGGTTGTCGAAGATAAATGAGGATGCAAATGACAAAAACGCAATTCAAGCAGTAACGGAACTCAAAATTGTAGACACATGCACATTAAATGGAGGTGAATCGCTTAAGACGAACATTGACTgcgaggaaaattcaaaaaatcaagcGGATTCAAAGGCTAAAAACACCagtaaaaagaagaataaaaccGGGAGGAGAATTAACAGACCTGCAGAATACAACTACCCGCAGAAGTGCGAATTTTGCGGTCAAgtgtttttagaaaaagaaatggttcGGCACAAGAAAGTTCATCCGGAATCATTTACTTTGGATTGCATACCGTgtggtaaatttttcaatacaaaaGCTGCATACGACACGCACTACAAcatccataaaatttatcactgCGTTTCTTGCAAGAGGGATTTCAATGCTCGGAAGCATTATCGCAGTCATATGGAAAGGATTCATAAGTCGGAAGGCGAAAGACCACGAATCCACGAATGCGATATTTGTCGGAAAACTTTTAAGGATAAGTTCGTTCTGAACACACACAAGAAAActcattttaacattaaagcTCATAAATGCCCCATGTGCGATTATGCTtgcaataatttaacttaCATGAAACAACACGTTATGAATCACACAAATCAACTTCAGTTTAAGTGTCATATATGTTACAGAGGCTTTATGACCGATTCAGAACTTCAGGTTCACATAGAGAAATTGCATTCTAATGAGCCTCAAATCTACAGCTGTGATACGTGCGGAAAGATATCGACGAGCAAGGGAAATCTTCGTCAGCATCAGAAAATTCATAATCCCGAGCATATGCAGAAAAAGGATCATCAGTGCTTCGAGTGCGGAAAAACGTTTGCATTGAAGTGTCGGCTTAAGAAGCACGTTCTGTCTCACAAAGGACAAGATAAATGCCATTGTAATATTTGCGGAAAGCTGTTGTCTAAAGATTCATacaagaaacatttaaaagcacACAGCGGCGAAAAGCAGTTCCTTTGCGATTTCTGCGGAGAGGCTTTCAGAACAAACAGCTTGCTCATGGGCCACAGAGGAATGCACACGGGGGAGAAACCGTACAAGCCGTACACGTGTGAAATATGCGGAAAATCATTTGCTCAGCATTATGTGTTTGCCGCACACAAGGGCACTCACAGGACATGTCATTGTGATGAATGTGGAAAATCGTTCACATCACCGTCAATGCTGGtcacacacaaaaaaattcatattgccGAAAACACTTTTACCTGCGAACAATGTGGCAAAGTATTTGAAGAGCATTCGCTTCTACTTGCGCATCGTAATTCTTATCATGCTCCGGAGCGACCTTATATGTTTATTAGTTTTACCAACCAaccttaa
- Protein Sequence
- MLRQHLLRHSGTKKVYKCSYCGKELSSNASLKAHTNIHTGLKPYVCEMCGNGFARRNYLVVHMRTHTREKPYVCKECGAAFAQKTSLTFHLRQLRSHLNQNTGASLDFICAFCDKGFPADEVLQEHLAKFHGEGASRILCDICNKTFANRKNLRVHKQSHELTYEERKHQCDVCGKKFLTKSNLLRHIRAHVQTRQFECSYCKKCLSSLSTLKDHEKIHTGEKPFICEICGKSFSRKKYLVTHSNTHANEKSYSCKECGSSFSQRGALTRHQRTMHIKRDPVRIMENVRKTKKWALNVRNKLKDVENVLLEIPWFDESNSENTISGCLKKDENNRNKEKNIKDCKKVIEGKKLGTESDAKLRDIVEKCSMGQNYCIICSTQYSCKIDFEIHVRSHKKIPCMICNKICLTGLRLLSHVRNMHSNKPKNLRCDQCSKMFATSNSLWVHKKTIHRTKWELMCFQCGYGTNSREMFEEHLQKAGENHSSFKCDACDKEYASQQNLDKHVQLYHIDHHCKYCNKEYGNRNNLLRHIQRSHGKQKFRNIPCDQCNKMFFTKWQLKVHMNLHINQKHQCPYCEYNTVYPQALKTHIKIHTKQYNCICDWCGKGFMNKCALKNHMSRVHLGVIVCCPVCQKKFHAQRYLDLHMECHQPGYEMRNHQCEICGKRFLRRPMLRRHLRAHKGLTKTYKCSYCDKMLTSSSSLKDHTNIHTGQRPYVCEICGNGFARKNYLTAHLRTHTKEKPFSCEECGPESSWTENYQVEESSEWLGLSKINEDANDKNAIQAVTELKIVDTCTLNGGESLKTNIDCEENSKNQADSKAKNTSKKKNKTGRRINRPAEYNYPQKCEFCGQVFLEKEMVRHKKVHPESFTLDCIPCGKFFNTKAAYDTHYNIHKIYHCVSCKRDFNARKHYRSHMERIHKSEGERPRIHECDICRKTFKDKFVLNTHKKTHFNIKAHKCPMCDYACNNLTYMKQHVMNHTNQLQFKCHICYRGFMTDSELQVHIEKLHSNEPQIYSCDTCGKISTSKGNLRQHQKIHNPEHMQKKDHQCFECGKTFALKCRLKKHVLSHKGQDKCHCNICGKLLSKDSYKKHLKAHSGEKQFLCDFCGEAFRTNSLLMGHRGMHTGEKPYKPYTCEICGKSFAQHYVFAAHKGTHRTCHCDECGKSFTSPSMLVTHKKIHIAENTFTCEQCGKVFEEHSLLLAHRNSYHAPERPYMFISFTNQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -